View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_109 (Length: 406)
Name: NF1345_low_109
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_109 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 67 - 406
Target Start/End: Complemental strand, 3714311 - 3713970
Alignment:
| Q |
67 |
atgaaaatcaacatcttactttctagcgtctaatttctgacagagacagtgggatatgaagggtgtgtcatgtcatgttacatggaaccttgttgaaatg |
166 |
Q |
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| T |
3714311 |
atgaaaatcaacatcttactttctagcgtctaatttctgacagagacagtgggatatgaagggtgtgtcatgtcatgttacatggaaccttgttgaaatg |
3714212 |
T |
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| Q |
167 |
atatttgtcgcttatgtgaaacctatggttttgtggcaatccgctccctcagatggcatatggtgtatgttccatgtggcatgctcctttggtgacggtt |
266 |
Q |
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| T |
3714211 |
atatttgtcgcttatgtgaaacctatggttttgtggcaatccgctccctcagatggcatatggtgtatgttccatgtggcatgctcctttggtgacggtt |
3714112 |
T |
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| Q |
267 |
tagccatgctctattgtccccaaaatctcttgtccccacctc----ccacatcacatttggacccatctgttgctattttcataagacaatggcgcaata |
362 |
Q |
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| T |
3714111 |
tagccatgctctattgtccccaaaatctcttgtccccacctcccacccacatcacatttggacccatctgttgctattttcataagacaatggcgcaata |
3714012 |
T |
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| Q |
363 |
ctgttgggttaaatgttttctctacctatcttaaattatgtaat |
406 |
Q |
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| T |
3714011 |
ctgttgggttaaatg--ttctctacctatcttaaattatgtaat |
3713970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 195 - 406
Target Start/End: Original strand, 17032469 - 17032680
Alignment:
| Q |
195 |
ttttgtggcaatccgctccctcagatggca-tatggtgtatgttccatgtggcatgctcctttggtgacggtt-tagccatgctctattgtccccaaaat |
292 |
Q |
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| T |
17032469 |
ttttgtggtaatccgctacctcagttggcaatatggtgtatgttccatgtggcatgctcctttggtgacggttctagccttgctttgctgtccccaaaat |
17032568 |
T |
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| Q |
293 |
ctcttgtccccacctcccacatcacatttggacccatctgttgctattttcataagacaatggcgcaatactgttgggttaaatgttttctctacctatc |
392 |
Q |
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| T |
17032569 |
ctcttgtccacacctcccacatcacattaggaaccatatgttgctactttcataatacaatggcgcaatactattgggttaaatg--ttctccacctatc |
17032666 |
T |
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| Q |
393 |
ttaaattatgtaat |
406 |
Q |
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| T |
17032667 |
ttgatttatgtaat |
17032680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 17032312 - 17032351
Alignment:
| Q |
112 |
acagtgggatatgaagggtgtgtcatgtcatgttacatgg |
151 |
Q |
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| T |
17032312 |
acagtgggttatgaagggtgtgtcttgtcatgttacatgg |
17032351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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