View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_11 (Length: 717)

Name: NF1345_low_11
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_11
NF1345_low_11
[»] chr5 (12 HSPs)
chr5 (259-527)||(41703458-41703722)
chr5 (308-572)||(41467374-41467644)
chr5 (10-162)||(41703141-41703317)
chr5 (473-560)||(41506883-41506970)
chr5 (465-527)||(41513161-41513223)
chr5 (488-574)||(41497620-41497706)
chr5 (465-527)||(41522096-41522158)
chr5 (310-423)||(41513268-41513381)
chr5 (555-594)||(41703717-41703756)
chr5 (500-574)||(33077964-33078038)
chr5 (71-113)||(41499197-41499239)
chr5 (308-381)||(33078159-33078232)
[»] chr4 (1 HSPs)
chr4 (591-621)||(45650399-45650429)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 259 - 527
Target Start/End: Original strand, 41703458 - 41703722
Alignment:
Q  259 tttgaagtttttgtttgagtattatcatgtttggcaaatattaacatatatatctctttttggaccagctggtggaagtctgaaactggaaaatgagatt 358  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41703458 tttgaagtttttgtttgagtattatcatgtttggcaaatataaacatat----ctcttgttggaccagctggtggaagtctgaaactggaaaatgagatt 41703553  T
Q  359 gagatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcag 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703554 gagatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcag 41703653  T
Q  459 tggcactggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 527  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  41703654 tggcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaaatcttctt 41703722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 308 - 572
Target Start/End: Complemental strand, 41467644 - 41467374
Alignment:
Q  308 atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggag 407  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||   |||| ||||||||||||||  ||  ||||     
T  41467644 atatctctttttggaccagccggtggaagagtgaaactggaaaatgagattgagatcataaaccttg---acgatgatgatcaatctatgcctcaaggaa 41467548  T
Q  408 tacatgaaaagaaagcatgttctggaatcac---------cgcaaatccatgttcatcagtggcactggcaacacaacaagaaagcaaatttgccaatgc 498  Q
    ||||||||||||||||  ||| |||||||||          | | | ||| ||||||||| ||| ||| |||| |||||| |||||||||||| ||||||    
T  41467547 tacatgaaaagaaagctagttttggaatcactgtgaagattgaagagccaagttcatcaggggccctgacaacccaacaaaaaagcaaatttggcaatgc 41467448  T
Q  499 agttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcat 572  Q
    ||||||||  ||||||||||||||||||| ||||  | |||||||||| ||||||||||| | ||||| |||||    
T  41467447 agttgacactgtcaaaagaaaattttctttcagcgacagtgaaacctcgacttctacttcctccgatggttcat 41467374  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 41703141 - 41703317
Alignment:
Q  10 ggaggaagatatcatacttttgacaagcttagaagaggaagttcctatggttg---------------------gtgacaacgagttcagaaatgaagat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||    
T  41703141 ggaggaagatatcatacttttgacaagcttagaagaggaagttcctatggttgatcattttgaagagaatgttggtgacaacgagttcagaaatgaagat 41703240  T
Q  89 gcctatcacactcttggagtttctggtagtaggagatgcct---atcatcaggtatatggaaattatgcatgtattt 162  Q
    ||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  41703241 gcctatcacactcttggagttgctggtagtaggagatgcctatcatcatcaggtatatggaaattatgcatgtattt 41703317  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 560
Target Start/End: Complemental strand, 41506970 - 41506883
Alignment:
Q  473 caacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctt 560  Q
    |||||| ||| ||| ||||| |||||||||||||  ||||||||||||||||||| ||||  | ||||||||||||||||| ||||||    
T  41506970 caacaaaaaaccaagtttgcaaatgcagttgacacggtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttctt 41506883  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 527
Target Start/End: Complemental strand, 41513223 - 41513161
Alignment:
Q  465 tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 527  Q
    |||||||||||||| ||||||||||| |||||||||||||||  || ||||||||||||||||    
T  41513223 tggcaacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt 41513161  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 574
Target Start/End: Complemental strand, 41497706 - 41497620
Alignment:
Q  488 tttgccaatgcagttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg 574  Q
    ||||| ||||| ||| ||| |||||||||||||||||||| ||||  | ||||||||||||||||| |||| |  ||||||||||||    
T  41497706 tttgcaaatgcggttaacacagtcaaaagaaaattttctttcagcgacagtgaaacctccacttcttcttcctctgatgattcattg 41497620  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 527
Target Start/End: Complemental strand, 41522158 - 41522096
Alignment:
Q  465 tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt 527  Q
    |||||||||||||| ||||||||||| |||||||||||||||   | ||||||||||||||||    
T  41522158 tggcaacacaacaaaaaagcaaatttcccaatgcagttgacacttttaaaagaaaattttctt 41522096  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 423
Target Start/End: Complemental strand, 41513381 - 41513268
Alignment:
Q  310 atctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggagta 409  Q
    ||||||||||| | ||||| |||||||  |||||||||| ||  | |||||| ||||| ||| |||| ||||||||| |   ||||| ||| ||||||||    
T  41513381 atctctttttgtatcagctagtggaagagtgaaactggataagaatattgaggtcatataccttgacgacgacgatgttgggtctatgtctcgaggagta 41513282  T
Q  410 catgaaaagaaagc 423  Q
    ||||||||||||||    
T  41513281 catgaaaagaaagc 41513268  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 555 - 594
Target Start/End: Original strand, 41703717 - 41703756
Alignment:
Q  555 cttctttcgatgattcattgccttttctccataatcttac 594  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  41703717 cttctttcgatggttcattgccttttctccataatcttac 41703756  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 574
Target Start/End: Complemental strand, 33078038 - 33077964
Alignment:
Q  500 gttgacagagtcaaaagaaaattttcttccagcatctgtgaaacctccacttctacttctttcgatgattcattg 574  Q
    ||||||| |||||||||||||| ||||| || |  | ||||||||||||||||||| || | |||||||| ||||    
T  33078038 gttgacacagtcaaaagaaaatattctttcaccgacagtgaaacctccacttctacgtcctccgatgatttattg 33077964  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 41499239 - 41499197
Alignment:
Q  71 gagttcagaaatgaagatgcctatcacactcttggagtttctg 113  Q
    ||||||||||||| ||||||  |||||||||||||||||||||    
T  41499239 gagttcagaaatgtagatgctcatcacactcttggagtttctg 41499197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 33078232 - 33078159
Alignment:
Q  308 atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacga 381  Q
    ||||||||||||| ||||| |||||||||  ||||| || |||| || || ||| ||||||||| |||||||||    
T  33078232 atatctctttttgtaccagttggtggaagattgaaattgaaaaaggatatggaggtcataaaccttgacaacga 33078159  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 621
Target Start/End: Original strand, 45650399 - 45650429
Alignment:
Q  591 ttactagaaaacaagttgttattattggagt 621  Q
    |||||||||||||||||||||||||||||||    
T  45650399 ttactagaaaacaagttgttattattggagt 45650429  T

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