View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_112 (Length: 402)

Name: NF1345_low_112
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_112
NF1345_low_112
[»] chr1 (7 HSPs)
chr1 (1-394)||(29443825-29444209)
chr1 (33-387)||(29422520-29422877)
chr1 (221-387)||(29454043-29454209)
chr1 (33-355)||(29468341-29468637)
chr1 (113-183)||(29453922-29453990)
chr1 (282-355)||(29473678-29473751)
chr1 (1-38)||(29468279-29468316)
[»] chr2 (8 HSPs)
chr2 (238-394)||(12019598-12019754)
chr2 (221-394)||(12006934-12007108)
chr2 (221-340)||(11988111-11988229)
chr2 (29-94)||(9364086-9364151)
chr2 (1-38)||(12019388-12019425)
chr2 (1-38)||(9066135-9066172)
chr2 (31-64)||(9274094-9274127)
chr2 (31-76)||(10352630-10352675)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 29443825 - 29444209
Alignment:
Q  1 tttgtttatgtatgtgtatttgacaatgtgtgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaa 100  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443825 tttgtttatgtatgtgtatttgaca---------tgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaa 29443915  T
Q  101 aaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  29443916 aaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggtatttttttccgtcatta 29444015  T
Q  201 gttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444016 gttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtg 29444115  T
Q  301 tagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgatattgttg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444116 tagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgatattgttg 29444209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 33 - 387
Target Start/End: Complemental strand, 29422877 - 29422520
Alignment:
Q  33 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 132  Q
    |||||||||||| ||||||||||||||||  |||| ||||||||||| |||||||||||  ||| ||||||||| |||||| || |||||| ||||||||    
T  29422877 tatgctatgtgtaggtttatgagttgacccagtgactagctaaactccaccctcctctc--gagtaaaaaatatcaagttaaaccaaagga-tttgcagg 29422781  T
Q  133 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaa-tcctcactatga----------- 220  Q
    |||||||| ||||| ||||| | ||| ||||||||||| ||||||||||||        || |||||||||| ||| ||||  ||||||               
T  29422780 attcctttgctttagaagtatgttaattaaataatattggtatgagttggtctttttttccttcattagttgtgaaatccttgctatgaaataattattt 29422681  T
Q  221 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 320  Q
    |||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||      |||||| |||||||||| |||||||||||||||||||||    
T  29422680 tgtcaaacttatttcggaatgttgagactattcaaccctgtcgtggtatctatgt------ggataagaacattgttgggtagaaatttgcctgcaatga 29422587  T
Q  321 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgat 387  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29422586 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgat 29422520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 221 - 387
Target Start/End: Original strand, 29454043 - 29454209
Alignment:
Q  221 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 320  Q
    |||||||||||||||| ||||||||| || ||| ||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29454043 tgtcaaacttatttcggaatgttgagtctattccaccctgttgtggtatctatgtatttaaggataagaacattgttgtgtagaaatttgcctgcaatga 29454142  T
Q  321 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgat 387  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29454143 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgat 29454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 33 - 355
Target Start/End: Original strand, 29468341 - 29468637
Alignment:
Q  33 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 132  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||| ||||||||    
T  29468341 tatgctatgtgtaggtttatgagttgaccttgtgactggctaaactcaaccct---------aggaaaaaatattaagttagacaaaagga-tttgcagg 29468430  T
Q  133 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttat 232  Q
    |||||||||||||||| ||||| | | || |||||||| ||||||||||||        || ||||| |||||| |||||||||| ||||||||||||||    
T  29468431 attcctttactttaaatgtaggttgagtatataatattggtatgagttggtctttttttccttcattggttgag-atcctcactacgatgtcaaacttat 29468529  T
Q  233 ttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaa 332  Q
    || ||||         ||||| ||| |||| | | ||||||||      |||||| ||||||||||||||||||||||| ||||||||  ||| || |||    
T  29468530 tttgaaa---------tgttcgaccctgtcatggcatctatgt------ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaa 29468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 29453922 - 29453990
Alignment:
Q  113 agacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggt 183  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29453922 agacaaaagga-tttgcaggattc-tttaatttaaaagtaggttaaataaataatattggtatgagttggt 29453990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 29473678 - 29473751
Alignment:
Q  282 ggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaa 355  Q
    |||||| ||||||||||||||||||||||| ||||||||  ||| || |||||||||||||| || ||||||||    
T  29473678 ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaatctatgtataattcatttcaaaa 29473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29468279 - 29468316
Alignment:
Q  1 tttgtttatgtatgtgtatttgacaatgtgtgtatgct 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  29468279 tttgtttatgtatatgtatttgacaatgtgtgtatgct 29468316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 12019598 - 12019754
Alignment:
Q  238 aatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctat 337  Q
    |||||||||||| ||| ||| ||| || |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  12019598 aatgttgagactattccaccctgttgtggtatctgtgtatttaaggataagaatattgttgtgtagaaatttacctgcaatgaa-ttactccaaatctat 12019696  T
Q  338 gtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatattgttg 394  Q
    |||||| |||||||||||||||||| || || |||||||||| |||||||||||||||    
T  12019697 gtataattcctttcaaaatatttatattatttatcactattcatttgtgatattgttg 12019754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 12006934 - 12007108
Alignment:
Q  221 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 320  Q
    ||||||||||||||| ||||||||||| | ||| ||| ||| || |||||| ||||||||||||||| || |||||| ||||||||||| |||  |||||    
T  12006934 tgtcaaacttatttcaaaatgttgagattattccaccctgttgtggtatctgtgtatttaaggataagaatattgttctgtagaaatttacctttaatga 12007033  T
Q  321 atttactcaaaatctatgtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatattgttg 394  Q
    | |||||| || ||||||||||| |||||||||||||||||| || || |||||||||| | |||||||||||||    
T  12007034 aattactccaactctatgtataattcctttcaaaatatttatattatttatcactattcatctgtgatattgttg 12007108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 340
Target Start/End: Original strand, 11988111 - 11988229
Alignment:
Q  221 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtg-tagaaatttgcctgcaatg 319  Q
    |||||||||||||||||||||||| |||| ||| ||| ||| || |||||| ||||  ||||||||| ||| |||||||| ||||||||| | |||||||    
T  11988111 tgtcaaacttatttcgaaatgttgtgactattctaccctgttgtggtatctgtgta--taaggataagaacgttgttgtgttagaaattttcttgcaatg 11988208  T
Q  320 aatttactcaaaatctatgta 340  Q
    || | |||| ||||| |||||    
T  11988209 aaataactccaaatcaatgta 11988229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 9364151 - 9364086
Alignment:
Q  29 tgtgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttg 94  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||| || || ||||||||||||||    
T  9364151 tgtgtatgttatgtgtcggtttaagagttgaccttgtgactagctgaagtccaccctcctctcttg 9364086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12019388 - 12019425
Alignment:
Q  1 tttgtttatgtatgtgtatttgacaatgtgtgtatgct 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  12019388 tttgtttatgtatatgtatttgacaatgtgtgtatgct 12019425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9066135 - 9066172
Alignment:
Q  1 tttgtttatgtatgtgtatttgacaatgtgtgtatgct 38  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  9066135 tttgtttatgtacatgtatttgacaatgtgtgtatgct 9066172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 9274127 - 9274094
Alignment:
Q  31 tgtatgctatgtgttggtttatgagttgaccttg 64  Q
    ||||||||||||||||||||| ||||||||||||    
T  9274127 tgtatgctatgtgttggtttaagagttgaccttg 9274094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 10352675 - 10352630
Alignment:
Q  31 tgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaa 76  Q
    |||||||||||||||| |||| ||||||||||||||| | ||||||    
T  10352675 tgtatgctatgtgttgttttaggagttgaccttgtgagttgctaaa 10352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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