View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_114 (Length: 398)
Name: NF1345_low_114
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 413254 - 412871
Alignment:
| Q |
15 |
ggcggaatatgaaggactggatactatactagtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaaattattccaaatgagtta |
114 |
Q |
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| T |
413254 |
ggcggaatatgaaggactggatacta-----gtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaaattattccaaatgagtta |
413160 |
T |
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| Q |
115 |
gagaaatcaaagagacttgcttgaatcacgatgctcacatgtgaaaatataatgccaagaatagcctttctgcttattttcaactcctcaaattataatg |
214 |
Q |
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| T |
413159 |
gagaaatcaaagagacttgcttgaatcgcgatgctcacatgtgaaaatataatgccaagaatagcctttctgtttattttcaactcctcaaattataatg |
413060 |
T |
|
| Q |
215 |
acataaatttaaaacagattgaagtcgcttggctacatccctccctatcattaaagagaataagaaagaagctttt----------------aaatgtgg |
298 |
Q |
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| T |
413059 |
acataaatttaaaacagattgaagtcgcttggctacattcctccctatcattaaagagaataagaaagaagcttttaatcttcagatgaaaaaaatgtgg |
412960 |
T |
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| Q |
299 |
gcatacatacatgtaaagaaaacagataaaaagc--tagatagatacagaacattataggacgagggtttgtatacaaacatcttaaatttag |
389 |
Q |
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| T |
412959 |
----acatacatgtaaagaaaacagataaaaagctttagatagatacagaacattatagaacaagggtttgtatacaaacatcttaaatttag |
412871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 7433204 - 7433085
Alignment:
| Q |
40 |
atactagtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaaattattccaaatgagttagagaaatcaaagagacttgcttgaa |
139 |
Q |
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| T |
7433204 |
atactagtctattgagtaatatcagaattttccacatgagaaatgtcctgaatacaaattgttccaaatgagttagagaaatcaaagagactgactt-aa |
7433106 |
T |
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| Q |
140 |
tcacgatgctcacatgtgaaa |
160 |
Q |
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| T |
7433105 |
tcgcgatgctcacatgtgaaa |
7433085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 11655715 - 11655833
Alignment:
| Q |
170 |
caagaatagcctttctgcttattttcaactcctcaaattataatgacataaa-tttaaaacagattgaagtcgcttggctacatccctccctatcattaa |
268 |
Q |
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| T |
11655715 |
caagaatagcctttctgcttattttcaactcctgaaattacaatgacataaactttaaaacagactgaagtggcttggc-aca----tccctatcattaa |
11655809 |
T |
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| Q |
269 |
agagaataagaaagaagcttttaa |
292 |
Q |
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| T |
11655810 |
agagaataagaaagaagcttttaa |
11655833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 11655375 - 11655495
Alignment:
| Q |
40 |
atactagtctattgagtaatatcagaattttccacatgagaaatgtcatgaatacaaattattccaaatgagttaga-gaaatcaaagagacttgcttga |
138 |
Q |
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||||||||||||| |||||||||| || | || ||| ||||||||| |||||||| ||| ||| |||||||||| | |||||||||| ||||||||| | |
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| T |
11655375 |
atactagtctattaagtaatatcaatatctcccgcataagaaatgtcctgaatacagattgttcaaaatgagttaaaggaaatcaaagcgacttgcttta |
11655474 |
T |
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| Q |
139 |
atcacgatgctcacatgtgaa |
159 |
Q |
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||||| ||||| | ||||||| |
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| T |
11655475 |
atcacaatgctaagatgtgaa |
11655495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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