View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_116 (Length: 395)
Name: NF1345_low_116
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 29532356 - 29532733
Alignment:
| Q |
6 |
aaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccatccaattagcata |
105 |
Q |
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| T |
29532356 |
aaattaagagtatagggtacatacctatgtcacggcgtcctaatcgtttaatctcttcttcgttggtggaaacagctatgtatcccatccaattagcata |
29532455 |
T |
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| Q |
106 |
agggctccacacagaagagatcttagatttcttgaagaattttggaagattgatatttgatgttgcatagaggtagcggcttatggtgtatccatctccc |
205 |
Q |
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| T |
29532456 |
agggctccaaacagaagagatcttagatttcttgaagaattttggaagattgatatttgatgttgcatagaggtagcggcttatggtgtatccatctccc |
29532555 |
T |
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| Q |
206 |
atgtaaagtttctcaaagaaatgtgcaggatgatacttgcatgttccacaatattttgagttttgatcgaagtcgaatgaatcgtaacatgcttgagcta |
305 |
Q |
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| T |
29532556 |
atgtaaagtttctcaaagaaatgtgcaggatgatacttgcatgttccacaatattttgagttttgatcgaagtcgaatgaatcgtaacatgcttgagcta |
29532655 |
T |
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| Q |
306 |
gctcaccatagcgaatgatttctttgcgtaggataggatccattggatctaatagaccttcccagtcgttctcgcctt |
383 |
Q |
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| T |
29532656 |
gctcaccatagcgaatgatttctttgcgtaggataggatccattggatctaatagaccttcccagtcgttctcgcctt |
29532733 |
T |
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