View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_119 (Length: 391)

Name: NF1345_low_119
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_119
NF1345_low_119
[»] chr7 (2 HSPs)
chr7 (13-363)||(22787713-22788061)
chr7 (124-164)||(40078664-40078704)
[»] chr5 (2 HSPs)
chr5 (126-175)||(35257333-35257382)
chr5 (126-158)||(27837133-27837165)
[»] chr8 (1 HSPs)
chr8 (124-206)||(26273981-26274063)
[»] chr1 (3 HSPs)
chr1 (124-215)||(43034330-43034416)
chr1 (124-188)||(42947853-42947917)
chr1 (126-162)||(15252194-15252230)
[»] chr4 (1 HSPs)
chr4 (141-204)||(37951616-37951679)
[»] chr3 (1 HSPs)
chr3 (125-164)||(1550449-1550488)
[»] chr2 (1 HSPs)
chr2 (124-164)||(26979543-26979583)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 22787713 - 22788061
Alignment:
Q  13 aatatataaatgcttaggaatgtaacgtttaatactaaagattcttagatagaaacatataagagcatttctatgagtagttagtaaaaaagtttgatat 112  Q
    |||| ||||||| |||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||    
T  22787713 aatagataaatgtttagaaatgtaacgcttaataccaaagattcttagatagcaacatataagagcatttccatgagtagctagtaaaaaaggttgatat 22787812  T
Q  113 tataaccgtctatgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaattaaattg 212  Q
    | ||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22787813 tttaaacatctatgatctgttatgtatgtgcatataatatcaactattgattcgtttatcaactgttgatattacttactttactctttaaattaaattg 22787912  T
Q  213 ttcttcactttagagaactatgatcagtcatggccgtcattctaatagttgaacccaggacctcaacaattataccaccgagctcaaccactacgccata 312  Q
    |||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  |    
T  22787913 ttcttcactttagagaactatgattagtcatggtcgtcgttctgatagttgaacccaggacctcaacgattataccaccgagctcaaccactacgcc--a 22788010  T
Q  313 tgttttcagcgttgcacattttgcaacgctactagtatatatcaatatttt 363  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  22788011 tgttttcagcgttgcacatttcacaacgctactagtatatatctatatttt 22788061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 40078704 - 40078664
Alignment:
Q  124 atgatttgttatgtatgtgcatataatatcaactattgatt 164  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  40078704 atgatttgttatgtatgtgtatataatatcaaccattgatt 40078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 35257333 - 35257382
Alignment:
Q  126 gatttgttatgtatgtgcatataatatcaactattgattcgattatcaac 175  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  35257333 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 35257382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 27837133 - 27837165
Alignment:
Q  126 gatttgttatgtatgtgcatataatatcaacta 158  Q
    ||||||||||| |||||||||||||||||||||    
T  27837133 gatttgttatgcatgtgcatataatatcaacta 27837165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 26274063 - 26273981
Alignment:
Q  124 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaatt 206  Q
    ||||||||||||| ||| ||||||||||| ||| |||| || | |||||||| |||| |||||||   |||||||||||||||    
T  26274063 atgatttgttatgcatgcgcatataatattaaccattggtttgtttatcaacggttggtattactcgttttactctttaaatt 26273981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 43034416 - 43034330
Alignment:
Q  124 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaattaaattgttc 215  Q
    ||||||||||||||  ||||||||||||||||   |||||| | |||  ||| |||||||||||| ||||||||||||||| | ||||||||    
T  43034416 atgatttgttatgt--gtgcatataatatcaa---ttgatttgtttaaaaacagttgatattactcactttactctttaaagtgaattgttc 43034330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 42947853 - 42947917
Alignment:
Q  124 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattact 188  Q
    |||||||||| |  || |||||||||||||||| ||||||| | |||||||| ||||||||||||    
T  42947853 atgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattact 42947917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 15252230 - 15252194
Alignment:
Q  126 gatttgttatgtatgtgcatataatatcaactattga 162  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  15252230 gatttgttatgcatgtccatataatatcaactattga 15252194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 37951616 - 37951679
Alignment:
Q  141 tgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaa 204  Q
    |||||||| ||||||| | ||||| | |||||||| |||||||||||| |||||||||| ||||    
T  37951616 tgcatatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaa 37951679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 1550449 - 1550488
Alignment:
Q  125 tgatttgttatgtatgtgcatataatatcaactattgatt 164  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  1550449 tgatttgttatgcatgtgcatataatatcaaccattgatt 1550488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 26979543 - 26979583
Alignment:
Q  124 atgatttgttatgtatgtgcatataatatcaactattgatt 164  Q
    ||||||||||||| |||| |||||||||||||| |||||||    
T  26979543 atgatttgttatgcatgtacatataatatcaaccattgatt 26979583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University