View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_120 (Length: 385)
Name: NF1345_low_120
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 120 - 320
Target Start/End: Original strand, 16948304 - 16948523
Alignment:
| Q |
120 |
attgaaagtctacaacacaaatatgacttgtattgtaaagtgttacagtgaggtaatggtccctagcatacttggaggagatctcaaactccaattctac |
219 |
Q |
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| T |
16948304 |
attgaaagtctacaacacaaatatgacttgtattgtaaagtgttacagtgaggtaatggtccctagcatacttggaggagatctcaaactccaattctac |
16948403 |
T |
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| Q |
220 |
tgggttggtcgtatttctagggccatcat-------------------ttcatcaataataacaattttaattgaataaagacaattggttctcattttc |
300 |
Q |
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| T |
16948404 |
tgggttggtcgtatttctagggccatcatttaatccaactatttactcttcatcaataataacaattttaattgaataaagacaattggttctcattttt |
16948503 |
T |
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| Q |
301 |
ctttggcataatttgagtaa |
320 |
Q |
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| T |
16948504 |
ctttggcataatttgagtaa |
16948523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 16948186 - 16948279
Alignment:
| Q |
1 |
tttgggtgtaaattggagaaccagtggtttagaattggagtatagtgtgaatcataacttagaaatattaggagccacatatattggtggcttt |
94 |
Q |
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| T |
16948186 |
tttgggtgtaaattggagaaccagtggtttagaattggagtatagtgtgaatcataacttagaaatattaggagccacatatattggtggcttt |
16948279 |
T |
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