View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_121 (Length: 384)
Name: NF1345_low_121
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_121 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 35371397 - 35371765
Alignment:
| Q |
1 |
caataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35371397 |
caataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaa |
35371496 |
T |
|
| Q |
101 |
gttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg------------ccttccttgcatgagtctcgatctccat |
188 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
35371497 |
gttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttgcatgagtctcgatctccat |
35371596 |
T |
|
| Q |
189 |
tgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35371597 |
tgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaattaccttcaccatatacatgttgcttgcactttagagcaatgaccatcaaaat |
35371696 |
T |
|
| Q |
289 |
ggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagttataattg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35371697 |
ggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagttagaattg |
35371765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 107 - 351
Target Start/End: Original strand, 35374296 - 35374543
Alignment:
| Q |
107 |
acattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttctt |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| | | || ||||| ||||| || | |||||||||| |
|
|
| T |
35374296 |
acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt |
35374395 |
T |
|
| Q |
204 |
caatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccattttagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35374396 |
caatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccattttagt |
35374495 |
T |
|
| Q |
304 |
tatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagtta |
351 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
35374496 |
tatatgagatgctaatgtaattgtgtgagttgagctgtgtttgagtta |
35374543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 300
Target Start/End: Original strand, 35355526 - 35355808
Alignment:
| Q |
26 |
taatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacattagagttttaggcag |
125 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35355526 |
taatttcgaactatattaaacgactattaactatatcttcaatatgctataatactaactagt-gacttatgtaagttaacacattagagttttaggcag |
35355624 |
T |
|
| Q |
126 |
cgggagcatagtcataaccaccgtcgtcgtcat---cgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgt |
222 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |||||||| || | |||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
35355625 |
caggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctccattgcgataatcttcttcaatgcaagatacatatgt |
35355724 |
T |
|
| Q |
223 |
ataatcaaacca------attaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt |
300 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| |||| | |||||||||| ||| |||| |||| |||| ||||||||||| |
|
|
| T |
35355725 |
ataaccaaaccaatcaccattaccttcatcatatccatgctccttgcactttggagtaatggccatagaaattgatgccatttt |
35355808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 35348465 - 35348166
Alignment:
| Q |
4 |
taacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagtt |
103 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||| | |||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35348465 |
taacaaacaaatagttaagtactaaattcgaacaata---aacgactata---tatatcttcaatatgctataatcctaactagaagactaatgtaagtt |
35348372 |
T |
|
| Q |
104 |
atcacattagagttttaggcagcgggagcatagtcataaccac---cgtcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatctt |
200 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| ||||||| | ||||| ||||| |||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
35348371 |
aacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatctt |
35348272 |
T |
|
| Q |
201 |
cttcaatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgc |
294 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| |||||||||| ||| |||| |||||||||||| ||| ||| ||| |||||||||| |
|
|
| T |
35348271 |
ctttaatgcaagatacacttgtataaccaaaccaatcaccgttaccttcactgtatccatgatgcttgcactttggagtaatagccaaagaaatggatgc |
35348172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 35343770 - 35343475
Alignment:
| Q |
17 |
gttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaag---ctaactagaagactaatgtaagttatcacattag |
113 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
35343770 |
gttaagttctaatttcgaactttattaaacgactactaactatatcttcaatatgctgtaaatatcctaactagaagactaatgtaagttaacacattag |
35343671 |
T |
|
| Q |
114 |
agttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc---gccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgca |
210 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
35343670 |
tgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgatctccattgtgataattttcttcaatgca |
35343571 |
T |
|
| Q |
211 |
agatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt |
300 |
Q |
| |
|
|||||||| ||||||| || |||| ||||||||||||||| |||| |||| ||||||| || |||| ||| |||||||||||||||| |
|
|
| T |
35343570 |
agatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggccaaagaaatggatgccatttt |
35343475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 35345904 - 35346205
Alignment:
| Q |
12 |
taatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacatt |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| ||| | | |||||| | ||| |||||||||| |||||| |
|
|
| T |
35345904 |
taatagttaagtactaatttttaactatattaaacgactactaactatatcttcaataggctttgatattaactactatacttatgtaagttaacacatt |
35346003 |
T |
|
| Q |
112 |
agagttttaggcagcgggagcatagtcataaccac---cgtcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatg |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||| | || ||| |||| |||||||| ||||||||| |||| |
|
|
| T |
35346004 |
agagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgcgataatcttctacaata |
35346103 |
T |
|
| Q |
209 |
caagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccattttag |
302 |
Q |
| |
|
||||||||| ||||||| |||||||| || ||||||||| |||||| ||||||||| | ||||||||||| | ||||||||||||||||||| |
|
|
| T |
35346104 |
caagatacagatgtataaccaaaccaatcaccgttgccttcaccacatgcattctgcttgcacaatggagcaatgaccgtgaaaatggatgccattttag |
35346203 |
T |
|
| Q |
303 |
tt |
304 |
Q |
| |
|
|| |
|
|
| T |
35346204 |
tt |
35346205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 345
Target Start/End: Original strand, 35368116 - 35368378
Alignment:
| Q |
90 |
gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctcc |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | || || |||| |
|
|
| T |
35368116 |
gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatcatgatccgt |
35368215 |
T |
|
| Q |
187 |
attgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgacc |
280 |
Q |
| |
|
|| | |||||||||||||| ||||||||| |||| || |||||||| | |||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
35368216 |
gttatgataatcttcttcaatacaagatacagatgtacaaccaaaccaatcaacttcaccttcaccatatgcatgctgcttgcagtttagagcaatgacc |
35368315 |
T |
|
| Q |
281 |
atcaaaatggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgttt |
345 |
Q |
| |
|
|| ||||| || ||| |||||||||| | ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
35368316 |
atggaaatgaatacca--ttagttatattatatgctaaggtagttgtgtgagttgagttgtgttt |
35368378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 35364257 - 35364469
Alignment:
| Q |
106 |
cacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttct |
202 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || || | | |||||| || ||| ||||||||| |
|
|
| T |
35364257 |
cacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttct |
35364356 |
T |
|
| Q |
203 |
tcaatgcaagatacacttgtataatcaaaccaattaccttcacc---------atatgcatgttgcttgcactttagagcaatgaccatcaaaatggatg |
293 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||| ||| ||||| |||||||| ||||||||||||| ||||||||||| | ||||| ||| |
|
|
| T |
35364357 |
tcaatgcaagatacacacgtataaccgaaccaatcaccgtcaccttcaccattatatgcatattgcttgcactttggagcaatgaccgtggaaatgaatg |
35364456 |
T |
|
| Q |
294 |
ccattttagttat |
306 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
35364457 |
tcattttggttat |
35364469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 35335584 - 35335699
Alignment:
| Q |
194 |
taatcttcttcaatgcaagatacacttgtataatcaaaccaattac------cttcaccat---atgcatgttgcttgcactttagagcaatgaccatca |
284 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||| ||||||||| || ||||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35335584 |
taatcttcttcaatgcaagatatatttgtgtaaccaaaccaatcacagtcgccttcaccgttaaatgcatgttgcttgcactttggagcaatgaccatgg |
35335683 |
T |
|
| Q |
285 |
aaatggatgccatttt |
300 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35335684 |
aaatggatgccatttt |
35335699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 35335492 - 35335561
Alignment:
| Q |
90 |
gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
159 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35335492 |
gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtcgtcatcatc |
35335561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 35351004 - 35351069
Alignment:
| Q |
94 |
aatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
159 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
35351004 |
aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatc |
35351069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 35340577 - 35340647
Alignment:
| Q |
90 |
gactaatgtaagttatcacattagagtttt-aggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
159 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35340577 |
gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatc |
35340647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 35348112 - 35348060
Alignment:
| Q |
299 |
ttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagtta |
351 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
35348112 |
ttagttatatgatatgctaaggtagttgtgtgagttgagctgtgtttgagtta |
35348060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 35355880 - 35355916
Alignment:
| Q |
315 |
ctaacgtaattgtgtgagttgagttgtgtttgagtta |
351 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
35355880 |
ctaaggtagttgtgtgagttgagttgtgtttgagtta |
35355916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 9077454 - 9077306
Alignment:
| Q |
108 |
cattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttcttc |
204 |
Q |
| |
|
||||||||||| || | ||||||||||| |||||| |||| ||||||||||| |||||| || |||| ||| ||||||| || |||||||||| || |
|
|
| T |
9077454 |
cattagagtttaag-cggcgggagcataatcataatcaccatcgtcgtcatcatcaccttccctgtatgaatctacatctccagtgtggtaatcttcatc |
9077356 |
T |
|
| Q |
205 |
aatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcat |
254 |
Q |
| |
|
| ||||||||||| || | || ||||||| | |||||||||| |||||| |
|
|
| T |
9077355 |
attgcaagatacagatgcaaaaccaaaccattcaccttcaccacatgcat |
9077306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 9063754 - 9063712
Alignment:
| Q |
117 |
tttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
159 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9063754 |
tttaagcagcgggagcatagtcataaccaccatcatcgtcatc |
9063712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University