View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_122 (Length: 382)

Name: NF1345_low_122
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_122
NF1345_low_122
[»] chr1 (6 HSPs)
chr1 (90-368)||(26317391-26317667)
chr1 (142-218)||(16074972-16075048)
chr1 (288-355)||(28561785-28561852)
chr1 (316-372)||(19198469-19198525)
chr1 (316-372)||(35761759-35761815)
chr1 (165-210)||(36386590-36386635)
[»] chr7 (5 HSPs)
chr7 (316-372)||(22078071-22078127)
chr7 (316-369)||(11036104-11036157)
chr7 (316-372)||(21491202-21491259)
chr7 (316-355)||(9993759-9993798)
chr7 (166-218)||(21491399-21491451)
[»] chr6 (4 HSPs)
chr6 (316-372)||(32449972-32450028)
chr6 (286-372)||(24163295-24163382)
chr6 (319-372)||(26182395-26182448)
chr6 (166-218)||(32450168-32450220)
[»] chr3 (2 HSPs)
chr3 (316-372)||(9104576-9104632)
chr3 (166-218)||(11937781-11937833)
[»] chr8 (2 HSPs)
chr8 (322-372)||(40841232-40841282)
chr8 (316-355)||(35840741-35840780)
[»] chr4 (3 HSPs)
chr4 (316-372)||(49499497-49499554)
chr4 (338-372)||(42899926-42899960)
chr4 (166-218)||(49499305-49499357)
[»] chr5 (1 HSPs)
chr5 (316-369)||(4557715-4557769)
[»] chr2 (1 HSPs)
chr2 (316-356)||(29271039-29271079)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 90 - 368
Target Start/End: Original strand, 26317391 - 26317667
Alignment:
Q  90 tttatatatctttgtgatatgttgggaatgaaatgttagattcttaataaagaaagaaatgaaaaacatgaagaggtgagtattatgaaaatattgactt 189  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26317391 tttatatatctttgtgat--gttgggaaagaaatgttagattcttaataaagaaagaaatgaaaaacatgaagagatgagtattatgaaaatattgactt 26317488  T
Q  190 ttggttcatgtgcatgatggtgtgttaatgttaatatttgcatatatttgcctaagtggcggatattttgtttgacagtgtttgccttagtggcggtggg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| || ||||||||||||||||||| |||    
T  26317489 ttggttcatgtgcatgatggtgtgttaatgttaatatttgcatatatttttctaagtggcgggtattttgttttactgtgtttgccttagtggcggcggg 26317588  T
Q  290 ttaatatcatattacttcctagtatttaagtggcgggatttagttttcattttcataatcatgcattaacatatgcatc 368  Q
    ||||||||||||| |||  | | ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||    
T  26317589 ttaatatcatattgctttgtggcatttaagtggcggaatttagtcttcattttcatgatcatgcattagcatatacatc 26317667  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 16074972 - 16075048
Alignment:
Q  142 aaagaaatgaaaaacatgaagaggtgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat 218  Q
    |||||||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||| || ||| |||||||||    
T  16074972 aaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggataatgatgtgttaat 16075048  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 28561785 - 28561852
Alignment:
Q  288 ggttaatatcatattacttcctagtatttaagtggcgggatttagttttcattttcataatcatgcat 355  Q
    ||||||||||||||| |||  | || |||||||||||||||||| ||||||||||||| |||||||||    
T  28561785 ggttaatatcatatttctttgtggtgtttaagtggcgggatttaattttcattttcatgatcatgcat 28561852  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 19198525 - 19198469
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||| ||||| | |||||||| || ||||||||||||||||||||||||||    
T  19198525 taagtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgtg 19198469  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 35761815 - 35761759
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||    
T  35761815 taagtggcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtg 35761759  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 36386635 - 36386590
Alignment:
Q  165 gtgagtattatgaaaatattgacttttggttcatgtgcatgatggt 210  Q
    |||||| ||||||||| ||||| |||||| ||||||||||||||||    
T  36386635 gtgagttttatgaaaagattgatttttgggtcatgtgcatgatggt 36386590  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 22078071 - 22078127
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  22078071 taagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtg 22078127  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 11036157 - 11036104
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatct 369  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  11036157 taagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatct 11036104  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 21491259 - 21491202
Alignment:
Q  316 taagtggcgggatttagttttcatt-ttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||| ||||||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  21491259 taagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtg 21491202  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 9993759 - 9993798
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcat 355  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  9993759 taagtggcgggatttagttttcattatcattatcatgcat 9993798  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 21491451 - 21491399
Alignment:
Q  166 tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat 218  Q
    ||||| |||||||||||||   |||||||||||||| |||||| |||||||||    
T  21491451 tgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaat 21491399  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 32450028 - 32449972
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||    
T  32450028 taagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtg 32449972  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 24163295 - 24163382
Alignment:
Q  286 tgggttaatatcatattacttcctagtatttaagtggcgggatttagttttca-ttttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||||||||||| ||  | || |||||||||||||||||||| |||| ||||||| || |||||||| |||||| |||||||    
T  24163295 tgggttaatatcatattattttgtggtgtttaagtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtg 24163382  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 26182448 - 26182395
Alignment:
Q  319 gtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    ||||| ||||||||| ||||||||||| ||||||||||||  ||||||||||||    
T  26182448 gtggcaggatttagtcttcattttcatgatcatgcattaatgtatgcatctgtg 26182395  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 32450220 - 32450168
Alignment:
Q  166 tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat 218  Q
    ||||| |||||||||||||   ||||||||||||||||||||| |||||||||    
T  32450220 tgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaat 32450168  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 9104576 - 9104632
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  9104576 taagtggcgtgatttagtcttcattttcatgatcatgcattagcatatgcatctgtg 9104632  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 11937833 - 11937781
Alignment:
Q  166 tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat 218  Q
    ||||| |||||||||||||   |||||||||||||| |||||| |||||||||    
T  11937833 tgagttttatgaaaatattttattttggttcatgtggatgatgatgtgttaat 11937781  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 40841282 - 40841232
Alignment:
Q  322 gcgggatttagttttcattttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  40841282 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtg 40841232  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 35840741 - 35840780
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcat 355  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  35840741 taagtggcgggatttagttttcattatcattatcatgcat 35840780  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 49499497 - 49499554
Alignment:
Q  316 taagtggcgggatttagttttcatt-ttcataatcatgcattaacatatgcatctgtg 372  Q
    |||||||| ||||||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  49499497 taagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtg 49499554  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 42899960 - 42899926
Alignment:
Q  338 attttcataatcatgcattaacatatgcatctgtg 372  Q
    ||||||||||||||||||||| |||||||||||||    
T  42899960 attttcataatcatgcattaatatatgcatctgtg 42899926  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 49499305 - 49499357
Alignment:
Q  166 tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat 218  Q
    ||||| |||||||||||||   |||||||||||||| |||||| |||||||||    
T  49499305 tgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaat 49499357  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 369
Target Start/End: Complemental strand, 4557769 - 4557715
Alignment:
Q  316 taagtggcgggatttagttttcatt-ttcataatcatgcattaacatatgcatct 369  Q
    |||||||| ||||||||| |||||| ||||| ||||||||||| |||||||||||    
T  4557769 taagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatct 4557715  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 29271039 - 29271079
Alignment:
Q  316 taagtggcgggatttagttttcattttcataatcatgcatt 356  Q
    |||||| ||||||||| ||||||||||||| ||||||||||    
T  29271039 taagtgacgggatttaattttcattttcatgatcatgcatt 29271079  T

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