View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_125 (Length: 380)
Name: NF1345_low_125
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 42969690 - 42969353
Alignment:
| Q |
14 |
aggtggtggtgtagaagtgcctggtagatcttatagtgagtatcatctaacagattattcaccttggttgaagaaaagaatacaagatcctcgttattgg |
113 |
Q |
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| T |
42969690 |
aggtggtggtgtagaagtgcctggtagatcttatagtgagtatcatcttacagattattcaccttggttgaagaaaagaatacaagatcctcgttattgg |
42969591 |
T |
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| Q |
114 |
aatactataaagaattgtattttagggtctaaaacttgtgacaaacttgcctcttggacccctttggattatatgcagaatgatatgtctccaatacagg |
213 |
Q |
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| T |
42969590 |
aatactataaagaattgtattttagggtctaaaacttgtgacaaacttgcctcttggacccctttggattacatgcagaatgatatgtctccaatacagg |
42969491 |
T |
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| Q |
214 |
tacaaattataattagtttaagttactagctcaattttcaataaatatattactactactaaagttacaaaataacattttttgaatgtgaaattgatta |
313 |
Q |
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| T |
42969490 |
tacaaattataattagtttaagttactagctcaattttcaataaatatattactactactaaagttacaaaataacattttttgaatgtgaaattgatta |
42969391 |
T |
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| Q |
314 |
atgctaagttatggttaatgtagtcaggatgttgtaag |
351 |
Q |
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| T |
42969390 |
atgctaagttatggttaatgtagtcaggatgttgtaag |
42969353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 10679339 - 10679138
Alignment:
| Q |
14 |
aggtggtggtgtagaagtgcctggtagatcttatagtgagtatcatctaacagattattcaccttggttgaagaaaagaatacaagatcctcgttattgg |
113 |
Q |
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| T |
10679339 |
aggtgggggtgttgaagtgcctggtagaacttatatggagtatcatcttcaaaattattcaccttggttgaagaaaaggattaaggatcatcaatattgg |
10679240 |
T |
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| Q |
114 |
aatactataaagaattgtattttagggtctaaaacttgtgacaaacttgcctcttggacccctttggattatatgcagaatgatatgtctccaatacagg |
213 |
Q |
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| T |
10679239 |
agtactattaagagttgtattatggggtctaatacttgttcaaaacttgcttcttggacctctcttgattatatgcaaagggatttgtctccaattcagg |
10679140 |
T |
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| Q |
214 |
ta |
215 |
Q |
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|| |
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| T |
10679139 |
ta |
10679138 |
T |
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