View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_126 (Length: 376)
Name: NF1345_low_126
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_126 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 365
Target Start/End: Original strand, 44823909 - 44824244
Alignment:
| Q |
30 |
tttttgaaatgaattcaggttctggaaaaactacaacatgtacaaaatatgcgcattattatcagaagaaaggatggaagccagctttagtgtgtgcaga |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44823909 |
tttttgaaatgaattcaggttctggaaaaactacaacatgtacaaaatatgcgcattgttatcagaagaaaggatggaagccagctttagtgtgtgcaga |
44824008 |
T |
|
| Q |
130 |
tacatttagagctggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggtatatgtttgtatttgttaatattgtt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824009 |
tacatttagagctggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggtatatgtttgtatttgttaatattgtt |
44824108 |
T |
|
| Q |
230 |
tttctttaagatcccgatataatactgttgtctgattgatgaggaatgacaaggtggagatggttggactgaattgtagattttgttttcttgttttgca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824109 |
tttctttaagatcccgatataatactgttgtctgattgatgaggaatgacaaggtggagatggttggactgaattgtagattttgttttcttgttttgca |
44824208 |
T |
|
| Q |
330 |
taaatgccacccgataactacatcatgtctgttcat |
365 |
Q |
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| T |
44824209 |
taaatgccacccgataactacatcatgtctgttcat |
44824244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 2204965 - 2204791
Alignment:
| Q |
30 |
tttttgaaatgaattcaggttctggaaaaactacaacatgtacaaaatatgcgcattattatcagaagaaaggatggaagccagctttagtgtgtgcaga |
129 |
Q |
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| T |
2204965 |
tttttgaaatgattttaggatctgggaaaaccactacttgtacaaaatatgcattttatcatcaaaagaaaggctggaagccagctctagtatgtgcaga |
2204866 |
T |
|
| Q |
130 |
tacatttagagctggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggta |
204 |
Q |
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|||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |
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| T |
2204865 |
tacattcagagctggtgcgtttgatcagttgaagcaaaatgcaaccaaagctaagatccctttctatggaaggta |
2204791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 33168733 - 33168591
Alignment:
| Q |
62 |
acaacatgtacaaaatatgcgcattattatcagaagaaaggatggaagccagctttagtgtgtgcagatacatttagagctggtgcatttgatcaattga |
161 |
Q |
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| T |
33168733 |
acaacatgtacacaatatgccaattattatcagaaaaaaggattaaaggaaggagtagtttgtgcagatacatttagagatggtgcatttgatcaattga |
33168634 |
T |
|
| Q |
162 |
agcaaaatgctactaaagctaagatccctttttatggaaggta |
204 |
Q |
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| T |
33168633 |
agcaaaattcaaccaaaactaacatcccttttaatggaaggta |
33168591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 33116973 - 33116810
Alignment:
| Q |
41 |
aattcaggttctggaaaaactacaacatgtacaaaatatgcgcattattatcagaagaaaggatggaagccagctttagtgtgtgcagatacatttagag |
140 |
Q |
| |
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|||||||||| ||||||||| ||||| ||| || ||| ||| || |||||||||||||||||| ||| ||| |||||||||| |||||||| ||||| |
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| T |
33116973 |
aattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagacaggtttagtgtgtacagatacacttagaa |
33116874 |
T |
|
| Q |
141 |
ctggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggta |
204 |
Q |
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|||||||||||||||||||||||| | | | || || |||| ||||||| |||||||||||| |
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| T |
33116873 |
atggtgcatttgatcaattgaagcagatttatgctgaaactaacatcccttgttatggaaggta |
33116810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 33159396 - 33159289
Alignment:
| Q |
62 |
acaacatgtacaaaatatgcgcattattatcagaagaaaggatggaagccagctttagtgtgtgcagatacatttagagctggtgcatttgatcaattga |
161 |
Q |
| |
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|||||||||||| |||||| ||||||||||||| ||||||| ||| ||| |||| ||||||||| ||||||||| |||||||||||||||||||| |
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| T |
33159396 |
acaacatgtacacaatatggcaattattatcagaaaaaaggattaaaggcaggagtagtttgtgcagatgcatttagagatggtgcatttgatcaattga |
33159297 |
T |
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| Q |
162 |
agcaaaat |
169 |
Q |
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|||||||| |
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| T |
33159296 |
agcaaaat |
33159289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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