View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_127 (Length: 375)
Name: NF1345_low_127
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_127 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 26316903 - 26317248
Alignment:
| Q |
30 |
tcaacaactttgtatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaagtccttttctcctt |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316903 |
tcaacaactttgcatgtgtacaaaatcttaaggtaagtcatattgtcgtccctttttccattctcttgttcatattctagtattaagtccttttctcctt |
26317002 |
T |
|
| Q |
130 |
tgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagacttgctcgtgcatttggtcaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26317003 |
tgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagacttgctcgtgcatttggtcaga |
26317102 |
T |
|
| Q |
230 |
atcaatcttaggacgtgctcgtgcttttggttcataatcaatcttagggacctctttcaacggaaaaacaccataaggtaagggctttttcccagacatc |
329 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || || |
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| T |
26317103 |
atcaatcttaggacgtgctcgtgcttttggtttagaatcaatcttagggacgtctttcaacggaaaagcaccataaggtaagggctttttcccaaacgtc |
26317202 |
T |
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| Q |
330 |
catactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
26317203 |
cataataagtgctagggctgtggtattaaatagtggtagcaattct |
26317248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 8421573 - 8421644
Alignment:
| Q |
304 |
aaggtaagggcttttt-cccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
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|||||||||||||||| |||| || | ||||||||||||||| |||||| |||||| ||| ||||||||||| |
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| T |
8421573 |
aaggtaagggctttttccccatacgtacatactaagtgctag-gctgtgttattaagtagaagtagcaattct |
8421644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 27026370 - 27026620
Alignment:
| Q |
30 |
tcaacaactttgtatgtgtacaaaatcttaaggtaag-tcatattgtcgtccctttttccattctcttgttcatattctagtattaagtccttttctcct |
128 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| || ||||||||||||||||| | |
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| T |
27026370 |
tcaataacttcgtatgtgtacaaaatcttaaggtaaggtcatggggttgtccctttt-ccattctcttgttcatattttattattaagtccttttctcat |
27026468 |
T |
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| Q |
129 |
ttgaagatttggccttgtctggaagtgctattatcaacctctccaattgtatttctttattcgcgtagcacttcaaagac-ttgctcgtgcatttggtca |
227 |
Q |
| |
|
||||||||||||| ||||||| |||| | ||| |||| ||||||||||||||||| |||||| |||| ||||||||||| |||||||||| ||||||| |
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| T |
27026469 |
ttgaagatttggctttgtctgaaagtattgttaccaacatctccaattgtatttctatattcgtgtagtacttcaaagactttgctcgtgcgtttggtcg |
27026568 |
T |
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| Q |
228 |
gaatcaatcttaggacgtgctcgtgcttttggttcataatcaatcttaggga |
279 |
Q |
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||||||||||||| |||||||||| |||| || | ||| |||| |||||| |
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| T |
27026569 |
gaatcaatcttagagtgtgctcgtgcgtttgatttagaattaatcataggga |
27026620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 38000844 - 38000916
Alignment:
| Q |
304 |
aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
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|||||||||| |||||||| | || |||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
38000844 |
aaggtaagggttttttccccatacgtccatactaagtgctagagctgtgttattaaataatggtagcaattct |
38000916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 38984770 - 38984700
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||| ||| ||| || |||||||||||| ||| |||||| |
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| T |
38984770 |
aggtaagggttttttcccatacatccatactaggtgttagggctctgttattaaatagtgttagaaattct |
38984700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 42860948 - 42861025
Alignment:
| Q |
84 |
tttccattctcttgttcatattctagtattaagtccttttctcctttgaagatttggccttgtctggaagtgctatta |
161 |
Q |
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|||||||||| |||||| ||||||| |||||||||| || || |||||||| ||||||||||| |||| |||||| |
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| T |
42860948 |
tttccattcttttgttcgtattctaatattaagtcccattttcttttgaagagctggccttgtctcaaagtactatta |
42861025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 41958586 - 41958514
Alignment:
| Q |
303 |
taaggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
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| T |
41958586 |
taaggtaagggctttttcccatacatccatattaagtgctagagctgtgttattaaatagtggtggcaattct |
41958514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 40841652 - 40841584
Alignment:
| Q |
307 |
gtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
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||||||||||||||||| || | | ||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
40841652 |
gtaagggctttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattct |
40841584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 44436065 - 44436134
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||||||||||| | || || ||||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
44436065 |
aggtaagggctttttcc-atacgtcaatactaagtgctaaggatgtgttattaaatagtggtagcaattct |
44436134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 69251 - 69321
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
69251 |
aggtaagggttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaattct |
69321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 40458906 - 40458976
Alignment:
| Q |
305 |
aggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||| ||||| |||||| ||| |||||||||||| |
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| T |
40458906 |
aggtaagggctttttccccatacgtccatactaagtgctaga-ctgtgttattaagtagaggtagcaattct |
40458976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 41340892 - 41340829
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtag |
368 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
41340892 |
aggtaagggctttttcccatacgtccatactaagtgttagagatgtgtcattaaatagtggtag |
41340829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 18292957 - 18292898
Alignment:
| Q |
315 |
tttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||| |||||| ||| |||||||||||| |
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|
| T |
18292957 |
tttttcccatacgtccatactaagtgctag-gctgtgttattaagtagaggtagcaattct |
18292898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 29270659 - 29270706
Alignment:
| Q |
328 |
tccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||||||| ||| | |||| ||||||||||||||||||||||| |
|
|
| T |
29270659 |
tccatactaagtgttagggttgtgctattaaatagtggtagcaattct |
29270706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 17542928 - 17542844
Alignment:
| Q |
291 |
ggaaaaacaccataaggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||| || | | |||||||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
17542928 |
ggaaaagcaccataaggtaaggccttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattct |
17542844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 43278485 - 43278418
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaat |
372 |
Q |
| |
|
|||||||||||||||| || || |||||| |||||| ||| |||||| ||||||||||||||||||| |
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|
| T |
43278485 |
aggtaagggctttttctcatacgtccatattaagtgttagggctgtgtcattaaatagtggtagcaat |
43278418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 12196817 - 12196745
Alignment:
| Q |
304 |
aaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
12196817 |
aaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattct |
12196745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 9993289 - 9993362
Alignment:
| Q |
303 |
taaggtaagggctttttccc-agacatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
|||||||||||||||||||| | || | | ||||||||||||| ||| || |||||||||| |||| ||||||| |
|
|
| T |
9993289 |
taaggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattct |
9993362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 12911952 - 12911885
Alignment:
| Q |
305 |
aggtaagggctttttcccagacatccatactaagtgctagagctgtggtattaaatagtggtagcaatt |
373 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||| | |||| |||||| || |||||||||| |
|
|
| T |
12911952 |
aggtaagggttttttcccatacgtccatactaagtgctag-gttgtgttattaagtaaaggtagcaatt |
12911885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 24158897 - 24158947
Alignment:
| Q |
325 |
acatccatactaagtgctagagctgtggtattaaatagtggtagcaattct |
375 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
24158897 |
acatccatactacgtgctagggctgtcttattaattagtggtagcaattct |
24158947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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