View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_132 (Length: 367)

Name: NF1345_low_132
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_132
NF1345_low_132
[»] chr4 (6 HSPs)
chr4 (68-279)||(28287340-28287550)
chr4 (61-177)||(18490147-18490263)
chr4 (71-143)||(2879842-2879914)
chr4 (76-179)||(54239210-54239313)
chr4 (114-246)||(34943755-34943887)
chr4 (81-155)||(24414339-24414413)
[»] chr3 (7 HSPs)
chr3 (60-192)||(1150795-1150927)
chr3 (60-179)||(34723483-34723602)
chr3 (87-166)||(20398800-20398879)
chr3 (82-153)||(24517481-24517552)
chr3 (81-114)||(24516652-24516685)
chr3 (60-148)||(1697416-1697504)
chr3 (60-148)||(33620421-33620509)
[»] chr7 (4 HSPs)
chr7 (68-199)||(32052640-32052771)
chr7 (60-134)||(11737531-11737605)
chr7 (68-156)||(32937136-32937224)
chr7 (60-155)||(721887-721982)
[»] chr5 (3 HSPs)
chr5 (60-155)||(14503725-14503820)
chr5 (63-241)||(7775006-7775184)
chr5 (79-167)||(35161122-35161210)
[»] chr8 (8 HSPs)
chr8 (60-153)||(9295005-9295098)
chr8 (68-179)||(16848323-16848434)
chr8 (74-167)||(2262364-2262457)
chr8 (60-167)||(15081164-15081270)
chr8 (60-98)||(6990238-6990276)
chr8 (82-184)||(29019486-29019588)
chr8 (82-174)||(38082457-38082549)
chr8 (319-347)||(2262598-2262626)
[»] chr1 (5 HSPs)
chr1 (60-199)||(13193187-13193326)
chr1 (60-148)||(28260507-28260595)
chr1 (60-147)||(45085332-45085419)
chr1 (83-140)||(22169621-22169678)
chr1 (63-241)||(11923479-11923657)
[»] chr6 (5 HSPs)
chr6 (81-165)||(10779518-10779602)
chr6 (87-178)||(19475010-19475101)
chr6 (63-241)||(8568913-8569091)
chr6 (78-179)||(13394565-13394666)
chr6 (60-112)||(2339503-2339555)
[»] chr2 (2 HSPs)
chr2 (99-199)||(5840739-5840838)
chr2 (88-148)||(8781127-8781187)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 68 - 279
Target Start/End: Original strand, 28287340 - 28287550
Alignment:
Q  68 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 167  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||    
T  28287340 caaactggctgcacgtattgaagatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaattatac 28287439  T
Q  168 atcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattccaagttataaaatcagatttttattt 267  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  28287440 attttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgta-gggtgaatttagtcattccaagttataaaaccatatttttattt 28287538  T
Q  268 tttcagcacaac 279  Q
    ||||||||||||    
T  28287539 tttcagcacaac 28287550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 18490147 - 18490263
Alignment:
Q  61 atgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttga 160  Q
    |||||| ||| || ||||||||||||||||||||| || |||||||||||||||||||| |||| || ||||||||| |||  |||||| ||||| |  |    
T  18490147 atgtaggcaagctagctgcacgtattgaagatgaaatgacgcgcaagaaatgttcaatgggaatagtacagatttgatatctagtgtctaattgactcaa 18490246  T
Q  161 attatacatcttcggaa 177  Q
    ||||||| | |||||||    
T  18490247 attataccttttcggaa 18490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 2879842 - 2879914
Alignment:
Q  71 actggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccg 143  Q
    ||||||||||||||||||||| ||||||||||| |||||| | |||||| |||| ||||| ||||| ||||||    
T  2879842 actggctgcacgtattgaagacgaagtggcgcgtaagaaaggctcaatgggaatagtgcaaatttggcatccg 2879914  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 54239210 - 54239313
Alignment:
Q  76 ctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcgg 175  Q
    ||||| |||| |||||||||||| ||||||||||||| ||||||| ||| ||| ||||||||||| ||  ||| |||||| |  |||||||||| ||| |    
T  54239210 ctgcatgtatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttgacattcgaagtcggattgactcaaattatacattttcag 54239309  T
Q  176 aaag 179  Q
    ||||    
T  54239310 aaag 54239313  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 34943887 - 34943755
Alignment:
Q  114 tcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctc 213  Q
    |||||| |||| ||||| ||||| |||||||| || ||||||||  |||| ||| | ||||| |||||||||||| |||||||||| ||||  | |||      
T  34943887 tcaatgggaatagtgcatatttggcatccggtctccgattgattcaaattgtaccttttcgggaagagaatttgcccacaagcataactcatcgcttcgt 34943788  T
Q  214 catgatgtaggggtgaatttagtcattccaagt 246  Q
    | ||||| |||||| ||||||| ||||| ||||    
T  34943787 cgtgatgcaggggtaaatttagccattcgaagt 34943755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 24414413 - 24414339
Alignment:
Q  81 cgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 155  Q
    ||||| |||||||||||||||||||||||||| ||| |  |||| ||| |||||||| ||| | |||| ||||||    
T  24414413 cgtatagaagatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggattga 24414339  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 1150795 - 1150927
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 159  Q
    ||||||| |||||| |||||  |||||||||||||||||||||||||||||  ||| ||| |||| |||||||||||||||||| | || |||||||| |    
T  1150795 gatgtaggcaaactagctgcgtgtattgaagatgaagtggcgcgcaagaaagattcgatgggaatagtgcagatttgacatccgatatccgattgattcg 1150894  T
Q  160 aattatacatcttcggaaagagaatttgctcac 192  Q
    ||| |||| | ||||||||| ||||||||||||    
T  1150895 aatgataccttttcggaaagggaatttgctcac 1150927  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 34723483 - 34723602
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 159  Q
    ||||||| || ||||||||| ||||||||||||||||||||||| |||||| ||| ||| ||||  ||| |||||||| |||  |||||||||||| |||    
T  34723483 gatgtaggcagactggctgcgcgtattgaagatgaagtggcgcgaaagaaaggtttaataagaagagtgtagatttgagatctagtgtctgattgacttg 34723582  T
Q  160 aattatacatcttcggaaag 179  Q
    || ||||| | |||||||||    
T  34723583 aaatataccttttcggaaag 34723602  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 20398879 - 20398800
Alignment:
Q  87 gaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattata 166  Q
    ||||| |||||||||||||||||| ||||| | ||||| |||||||||| |||||||||||| |||||||  ||||||||    
T  20398879 gaagacgaagtggcgcgcaagaaaggttcagtcagaattgtgcagattttacatccggtgtcagattgatcagaattata 20398800  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 24517552 - 24517481
Alignment:
Q  82 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgatt 153  Q
    ||||||||||  ||||| || | |||||| |||||||| |||| |||||||||||| |||||||||| ||||    
T  24517552 gtattgaagactaagtgacgtgtaagaaaggttcaatgtgaatagtgcagatttgatatccggtgtccgatt 24517481  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 24516685 - 24516652
Alignment:
Q  81 cgtattgaagatgaagtggcgcgcaagaaatgtt 114  Q
    ||||||||||||||||||||||| ||||||||||    
T  24516685 cgtattgaagatgaagtggcgcgtaagaaatgtt 24516652  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 1697504 - 1697416
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 148  Q
    ||||||| |||||| || |||||| | |||||||||||||| ||||||||| ||| | |  |||| ||||| ||||| |||||| ||||    
T  1697504 gatgtaggcaaactagcggcacgtgtcgaagatgaagtggcacgcaagaaaagtttactcggaatagtgcaaatttggcatccgatgtc 1697416  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 33620509 - 33620421
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 148  Q
    |||||||  |||| ||| ||||| || ||||| |||||| ||||||||||| ||||| |  |||||||| | |||| ||||||||||||    
T  33620509 gatgtagataaaccggcggcacggatcgaagacgaagtgacgcgcaagaaaggttcactcggaatggtgtatattttacatccggtgtc 33620421  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 32052640 - 32052771
Alignment:
Q  68 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 167  Q
    |||||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||  | ||||| ||   |||||| |||||| | |||||||||    
T  32052640 caaactggctgcacatattgaagatgaagtggcgcgcaagaaagactcaatgagaatagtctaaatttggcaattggtgtccgattgactcgaattatac 32052739  T
Q  168 atcttcggaaagagaatttgctcacaagcata 199  Q
     | ||||||||| |||||||||||| ||||||    
T  32052740 cttttcggaaagggaatttgctcacgagcata 32052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 11737605 - 11737531
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatt 134  Q
    ||||||| |||||||||||||||| | |||||||||||||||||||||||| | ||||||| ||| ||| |||||    
T  11737605 gatgtaggcaaactggctgcacgtgtcgaagatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt 11737531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 32937224 - 32937136
Alignment:
Q  68 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgat 156  Q
    |||| ||||||||||||| |||||||||||| || |||| ||| ||||||||||||| ||| ||||||  |||||| |||| |||||||    
T  32937224 caaattggctgcacgtatcgaagatgaagtgacgtgcaaaaaaggttcaatgagaatagtgtagatttagcatccgatgtcggattgat 32937136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 721982 - 721887
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 155  Q
    ||||||| |||| ||||| || |||| |||||||||||||| | |||||||   |||||| |||| ||| ||||||| ||||||||||| ||||||    
T  721982 gatgtaggcaaattggctacatgtatcgaagatgaagtggcacacaagaaagactcaatgtgaatagtgtagatttgccatccggtgtcggattga 721887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 14503725 - 14503820
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 155  Q
    ||||||| |||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||| |||||||||| ||||| |||||| ||||||    
T  14503725 gatgtaggcaaagtggctgcacttattgaagataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattga 14503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 7775006 - 7775184
Alignment:
Q  63 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 162  Q
    |||| |||||||||| ||| ||||||||| |||| |||| |||||||| | ||||||  |||  ||||||||||  |||||||||  |||||| | ||||    
T  7775006 gtaggcaaactggctacacatattgaagacgaagcggcgtgcaagaaaggctcaatggaaataatgcagatttggtatccggtgtacgattgactcgaat 7775105  T
Q  163 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 241  Q
    ||||| | ||||||||  |||||||||||| | | || |||   | || |||| |||||| |||||||||||| |||||    
T  7775106 tatacgttttcggaaaaggaatttgctcacgaccttaactcgtcgcttttccacgatgtaagggtgaatttagccattc 7775184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 35161210 - 35161122
Alignment:
Q  79 cacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 167  Q
    ||||||| |||||||||||| ||  ||||||||||||| |  |||| ||| |||||||||||||| |||  | |||||| |||||||||    
T  35161210 cacgtatcgaagatgaagtgacgtacaagaaatgttcatttggaatagtgtagatttgacatccgttgttgggttgattcgaattatac 35161122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 9295005 - 9295098
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgatt 153  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||| |||||||| ||||||| ||| ||| ||||||| ||||||||||| ||||    
T  9295005 gatgtaggcaaactagctgcacgtatcgaagatgaagtggtgcgtaagaaatgctcaatgaaaatagtgtagatttggcatccggtgtcggatt 9295098  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 16848323 - 16848434
Alignment:
Q  68 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 167  Q
    ||||||||| || ||||| ||||||||||||||||  ||||||   ||| | ||||| |||||||||||||||||| |||| ||||||  ||||||||||    
T  16848323 caaactggcggcgcgtatcgaagatgaagtggcgcataagaaagactcacttagaatagtgcagatttgacatccgatgtcggattgacctgaattatac 16848422  T
Q  168 atcttcggaaag 179  Q
    || |||||||||    
T  16848423 attttcggaaag 16848434  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 2262364 - 2262457
Alignment:
Q  74 ggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 167  Q
    |||| ||||||||||||||||||||||||| || ||| |||||||||||||  |||||||||| ||||  ||||| |||||| | |||||||||    
T  2262364 ggcttcacgtattgaagatgaagtggcgcgtaacaaaagttcaatgagaataatgcagatttggcatctagtgtcggattgactcgaattatac 2262457  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 15081164 - 15081270
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 159  Q
    ||||||| ||||||||||||| |||||||||||||||||||| | |||||| |||||||  ||||  || | | ||| ||||||||||| |||||| | |    
T  15081164 gatgtaggcaaactggctgcatgtattgaagatgaagtggcgtgtaagaaaagttcaataggaatattgta-aattggcatccggtgtcggattgactcg 15081262  T
Q  160 aattatac 167  Q
    ||||||||    
T  15081263 aattatac 15081270  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 6990276 - 6990238
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtg 98  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  6990276 gatgtaggcaaactggctgcacgtattgaagatgaagtg 6990238  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 29019588 - 29019486
Alignment:
Q  82 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagag 181  Q
    ||||||||||||||||| |  |||| ||| ||| ||||||||| |||||||||||||||| | |||| || ||| ||||| ||||| | || |||||| |    
T  29019588 gtattgaagatgaagtgtcatgcaaaaaaagtttaatgagaatagtgcagatttgacatctgttgtccgaatgacttgaaatatacctttttggaaaggg 29019489  T
Q  182 aat 184  Q
    |||    
T  29019488 aat 29019486  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 38082549 - 38082457
Alignment:
Q  82 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcg 174  Q
    |||| |||||||||||| |||||||||||   ||  | ||||| ||||||||||| ||||||||||| || ||| | ||||||||||| ||||    
T  38082549 gtatcgaagatgaagtgacgcgcaagaaagactcgctcagaatagtgcagatttggcatccggtgtcggaatgactcgaattatacattttcg 38082457  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 2262598 - 2262626
Alignment:
Q  319 cggcccattaggatttgttatttccctag 347  Q
    |||||||||||||||||||||||||||||    
T  2262598 cggcccattaggatttgttatttccctag 2262626  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 13193326 - 13193187
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 159  Q
    ||||||| ||| ||||||||||||||  |||||||||||||| |||||||||     |||||||| ||||||||||||||| |  ||||  ||||| | |    
T  13193326 gatgtaggcaagctggctgcacgtatcaaagatgaagtggcgtgcaagaaatacattatgagaatagtgcagatttgacattcaatgtcatattgactcg 13193227  T
Q  160 aattatacatcttcggaaagagaatttgctcacaagcata 199  Q
    |||||||| | ||||||||| |||||| ||||| ||||||    
T  13193226 aattataccttttcggaaagggaatttcctcacgagcata 13193187  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 28260595 - 28260507
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 148  Q
    ||||||| |||||||||| ||||  | ||||||||||||| ||| ||||||   ||||||||||| |||||||||||||||||||||||    
T  28260595 gatgtaggcaaactggctccacgattcgaagatgaagtggtgcgtaagaaagactcaatgagaatagtgcagatttgacatccggtgtc 28260507  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 45085332 - 45085419
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgt 147  Q
    ||||||| |||| ||||||||| ||  |||||||||||| ||||||||||| | |||||||||||  |||| |||||  |||||||||    
T  45085332 gatgtaggcaaattggctgcacataccgaagatgaagtgtcgcgcaagaaaggctcaatgagaataatgcatatttggtatccggtgt 45085419  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 22169621 - 22169678
Alignment:
Q  83 tattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacat 140  Q
    ||||||||| ||||||||||||||||||| ||||| | |||| ||||| |||||||||    
T  22169621 tattgaagacgaagtggcgcgcaagaaatattcaaggggaatagtgcaaatttgacat 22169678  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 11923479 - 11923657
Alignment:
Q  63 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 162  Q
    |||| |||||||||| ||| ||||||||| |||  |||  |||||||| | ||||||  |||  ||||||||||  |||||||||  |||||  | ||||    
T  11923479 gtaggcaaactggctacacatattgaagacgaatcggcatgcaagaaaggctcaatggaaataatgcagatttggtatccggtgtacgattggctcgaat 11923578  T
Q  163 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 241  Q
    ||||  | ||||||||  |||||||||||| ||| || |||   | || |||| |||||| |||||||||||| |||||    
T  11923579 tatatgttttcggaaaaggaatttgctcacgagcttaactcgtcgcttttccacgatgtaagggtgaatttagccattc 11923657  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 10779518 - 10779602
Alignment:
Q  81 cgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattat 165  Q
    |||||||||||||||||||||||||||||| ||||| | | ||||||||||||||  |||| |||||| || |||  ||||||||    
T  10779518 cgtattgaagatgaagtggcgcgcaagaaaggttcacttaaaatggtgcagattttgcatctggtgtcagaatgacctgaattat 10779602  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 19475101 - 19475010
Alignment:
Q  87 gaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaa 178  Q
    |||||||||| || |||||| ||| ||||| | ||||| ||||||||||| ||||||||||| || ||| | ||||||||||| || |||||    
T  19475101 gaagatgaagcggagcgcaaaaaaggttcactcagaatagtgcagatttggcatccggtgtcggaatgactcgaattatacatttttggaaa 19475010  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 8569091 - 8568913
Alignment:
Q  63 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 162  Q
    |||| ||||||||||  || ||||||||| |||| |||| |||||||| | |||||   |||  ||||||||||  ||| |||||  |||||| | ||||    
T  8569091 gtaggcaaactggctatacatattgaagacgaagcggcgtgcaagaaaggctcaatagaaataatgcagatttggtatctggtgtacgattgactcgaat 8568992  T
Q  163 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 241  Q
    ||||| | ||||||||  |||||||||||| ||| || |||   | || |||| |||||| |||||||||||| |||||    
T  8568991 tatacgttttcggaaaaggaatttgctcacgagcttaactcgtcgattttccacgatgtaagggtgaatttagccattc 8568913  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 13394666 - 13394565
Alignment:
Q  78 gcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaa 177  Q
    ||||| || ||||| || ||||| ||||||||| ||||| | | ||||||||| ||||  ||| |||||||||||||||   |||||||| | |||||||    
T  13394666 gcacgaatcgaagacgatgtggcacgcaagaaaggttcagtcaaaatggtgcatatttttcattcggtgtctgattgatccaaattataccttttcggaa 13394567  T
Q  178 ag 179  Q
    ||    
T  13394566 ag 13394565  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 2339555 - 2339503
Alignment:
Q  60 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatg 112  Q
    ||||||| ||||||||| || | |||||||||||||||||| | |||||||||    
T  2339555 gatgtagacaaactggcggcgcatattgaagatgaagtggctcacaagaaatg 2339503  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 5840739 - 5840838
Alignment:
Q  99 gcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagagaatttgctcacaagcat 198  Q
    ||||||||||||   |||||| |||| ||||||||||| || |||||||| |||||| | ||||||||||| ||||||||| ||||| |||||| |||||    
T  5840739 gcgcgcaagaaagactcaatg-gaatagtgcagatttggcaaccggtgtcggattgactcgaattatacattttcggaaagggaattcgctcacgagcat 5840837  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 8781127 - 8781187
Alignment:
Q  88 aagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 148  Q
    |||| |||||||||||||||||| ||||| | |||| |||||||||||  |||| ||||||    
T  8781127 aagacgaagtggcgcgcaagaaaggttcagtcagaacggtgcagattttgcatctggtgtc 8781187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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