View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_134 (Length: 365)
Name: NF1345_low_134
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_134 |
 | |
|
| [»] scaffold0015 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 16772765 - 16772588
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16772765 |
atgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa |
16772666 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16772665 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
16772588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 32708005 - 32708182
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32708005 |
atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa |
32708104 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32708105 |
caagccaccatgtttgacatttactagattgtgtttccattgatatattaattatcagcactatttcagctaccatat |
32708182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 16778100 - 16777924
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16778100 |
tgatacagagtaaaactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
16778001 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16778000 |
aagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
16777924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 32703644 - 32703805
Alignment:
| Q |
99 |
agagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaataagcca |
198 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
32703644 |
agagtaagacactaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaacaag---------cca |
32703734 |
T |
|
| Q |
199 |
ccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32703735 |
ccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcattatttcagctaccatat |
32703805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 29825 - 29649
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29825 |
tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
29726 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29725 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
29649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 24510 - 24333
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24510 |
atgatacagagtaagactttaatatcgcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa |
24411 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24410 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
24333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 2797303 - 2797127
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2797303 |
tgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaat |
2797204 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797203 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
2797127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 42375121 - 42375297
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42375121 |
tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
42375220 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42375221 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatat |
42375297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 2790874 - 2790697
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2790874 |
atgatacaaagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaatttcaccaccctactattgacaataaggccaa |
2790775 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2790774 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
2790697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 21010705 - 21010524
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
|||| ||||| ||||| || |||||||||| ||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
21010705 |
tgatacagagaaagacattcatatggcatagactttgcagtcaccaccctaccatgctagctttccaatttcaccaccctactattgacaataaggccaa |
21010606 |
T |
|
| Q |
192 |
taagccaccatgtttgaca---------tttactagattgtgtttccattgatgtattaattatcagcactatttcagctac |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||| |||| |
|
|
| T |
21010605 |
caagccaccatgtttgacaatatctatttttactagattgtgtttccattgatgtgttaattattattactatttcaactac |
21010524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 395012 - 394908
Alignment:
| Q |
151 |
gctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgaca---------tttactagattgtgtttccattgatgtatta |
241 |
Q |
| |
|
||||||| |||||| ||| |||||||| || |||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
395012 |
gctttcccattccatcactctactattgactttaagccaaataagccatcatgtttgacaatatctatttttactagattgtgtttccattgatgtatta |
394913 |
T |
|
| Q |
242 |
attat |
246 |
Q |
| |
|
||||| |
|
|
| T |
394912 |
attat |
394908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 91580 - 91757
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
91580 |
atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa |
91679 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91680 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
91757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 29011080 - 29010904
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29011080 |
tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactatcgacaataaggccaac |
29010981 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29010980 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
29010904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 86264 - 86440
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
86264 |
tgatacagagtaagacattaatatggcatagactttgcagctaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
86363 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86364 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
86440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 19802735 - 19802911
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19802735 |
tgatacagagtaagacattaatatggcatagagttttcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
19802834 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19802835 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
19802911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 26491919 - 26491885
Alignment:
| Q |
211 |
tttactagattgtgtttccattgatgtattaatta |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
26491919 |
tttactagattgtgtttcaattgatgtattaatta |
26491885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 12842727 - 12842904
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12842727 |
atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa |
12842826 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842827 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
12842904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 37023225 - 37023049
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37023225 |
tgatacagagtaagactttaatatggcatagattttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac |
37023126 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37023125 |
aagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcaactaccatat |
37023049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 24092379 - 24092264
Alignment:
| Q |
99 |
agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc |
197 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||||||||||||||||| ||| ||||||||| | | ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
24092379 |
agagcaagacattactatggcatagactttgcagccaccaccctaccatgctagctttcctagttcaccaccctactattgacaataaggccaacaagcc |
24092280 |
T |
|
| Q |
198 |
accatgtttgacattt |
213 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24092279 |
accatgtttgacattt |
24092264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 13723352 - 13723174
Alignment:
| Q |
91 |
tatgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggcca |
190 |
Q |
| |
|
|||||| || |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13723352 |
tatgatacacagtaagacattaatatgacatagactttgcagccaccaccctatatgttagctttccaattccaccaccctactatttacaataaggcca |
13723253 |
T |
|
| Q |
191 |
ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13723252 |
acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
13723174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 269
Target Start/End: Complemental strand, 13719448 - 13719277
Alignment:
| Q |
98 |
cagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaataagcc |
197 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
13719448 |
cagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccttactattgacaataaggccaacaagcc |
13719349 |
T |
|
| Q |
198 |
accatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13719348 |
accatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatat |
13719277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 6806884 - 6806706
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccc-tatatgttagctttccaattccaccaccctactattcacaataaggcca |
190 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6806884 |
atgatacagagtaagacattaatatgacatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca |
6806785 |
T |
|
| Q |
191 |
ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6806784 |
acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattaacagcactatttcagctaccatat |
6806706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 26137223 - 26137072
Alignment:
| Q |
118 |
gcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgacatttact |
216 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||| || ||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
26137223 |
gcatagactttgcagccaccaccctatcatgctagcac-cctattccaccaccctactattgacaataaggccaacaagtcaccatatttgacatttact |
26137125 |
T |
|
| Q |
217 |
agattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26137124 |
agattgtgtttccattgatgtattaattattagtactatttcagctaccatat |
26137072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 4099570 - 4099691
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||| |||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4099570 |
tgatacagagcaagacattactatggcatagactttgtagccaccaccctaccatgctagctttcctattccaccaccctactattgacaataaggccaa |
4099669 |
T |
|
| Q |
192 |
taagccaccatgtttgacattt |
213 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
4099670 |
caagccaccatttttgacattt |
4099691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 23619202 - 23619351
Alignment:
| Q |
124 |
actttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgacatt---------- |
212 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||||| || |||||| || |||||| ||||||||||||| |
|
|
| T |
23619202 |
actttgcggccaccaccctaccatgctagttttcccattccaccatcctactattgactttaaggcaaacaagccatcatgtttgacattatattttttt |
23619301 |
T |
|
| Q |
213 |
---tactagattgtgtttccattgatgtattaattatcagcactatttca |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
23619302 |
ttttactagattgtgtttccattgatgtattagttaccattactatttca |
23619351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 11708868 - 11709044
Alignment:
| Q |
93 |
tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat |
192 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
11708868 |
tgatacagagtaagacattaatatagcatagactttgcagccaccaccctatatgctagctttccaattccacaaccctattattgacaataaggccaac |
11708967 |
T |
|
| Q |
193 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11708968 |
aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
11709044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 11716383 - 11716560
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa |
191 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
11716383 |
atgatacagagtaagacattaatatgacatagactttgcagccaccaccctatatgctagcttttcaattccacaaccctattattgacaataaggccaa |
11716482 |
T |
|
| Q |
192 |
taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11716483 |
caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
11716560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 13160340 - 13160511
Alignment:
| Q |
99 |
agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc |
197 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
13160340 |
agagcaagacattaatatggcatagactttgcagccaccaccctaccatgctagctttccaattccaccaccctactattgaaaataaggccaacaagcc |
13160439 |
T |
|
| Q |
198 |
accatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
13160440 |
tccatgtttgacatttactagattgtgtttccattgatgtattaattattagtactatttcagctaccatat |
13160511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 13166800 - 13166963
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggcca |
190 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| | |||||||||||||| ||| ||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13166800 |
atgatacagagcaagacattaatatggcatagaatttgcagccaccacgctaccatgctacctttccaattccaccaccctactattgacaataaggcca |
13166899 |
T |
|
| Q |
191 |
ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctacc |
265 |
Q |
| |
|
| | |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
13166900 |
aca-----------ttgacatttactagattgtgtttccatttatgtattaattattaatactatttcagctacc |
13166963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 37063105 - 37063163
Alignment:
| Q |
211 |
tttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat |
269 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| | ||||||||| |||| |||| |
|
|
| T |
37063105 |
tttactggattgtgttttcattgatgtattaattattattactatttcaactacaatat |
37063163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 14026807 - 14026985
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccc--tactattcacaataaggcc |
189 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
14026807 |
atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctaactttccaattccaccaccccctactattgacaataaggcc |
14026906 |
T |
|
| Q |
190 |
aataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccata |
268 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026907 |
aacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccata |
14026985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 14023866 - 14023910
Alignment:
| Q |
92 |
atgatgcagagtaagactttaatatggcataaactttgcagccac |
136 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
14023866 |
atgatacagagtaagacattaatatggcatagactttgcagccac |
14023910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 20925617 - 20925513
Alignment:
| Q |
165 |
ccaccctactattcacaataaggccaataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctac |
264 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20925617 |
ccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctac |
20925518 |
T |
|
| Q |
265 |
catat |
269 |
Q |
| |
|
||||| |
|
|
| T |
20925517 |
catat |
20925513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 36314863 - 36314767
Alignment:
| Q |
118 |
gcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattca-caataaggccaataagccaccatgtttgacattt |
213 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||| | |||||||||||| || |||||||||||||||||| |
|
|
| T |
36314863 |
gcataaactttgcagccaccacctaccatgctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgacattt |
36314767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 37758843 - 37758931
Alignment:
| Q |
118 |
gcataaactttgcagccaccaccctat-atgttagctttccaattccacca-ccctactattcacaataaggccaataagccaccatgt |
204 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||||| ||||||||| |||||||||| || ||| ||||| |||||||||||| |
|
|
| T |
37758843 |
gcatagactttgcagccaccaacctatcatgctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatgt |
37758931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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