View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_137 (Length: 361)

Name: NF1345_low_137
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_137
NF1345_low_137
[»] chr6 (5 HSPs)
chr6 (41-227)||(22856349-22856534)
chr6 (42-227)||(33077572-33077756)
chr6 (255-351)||(22856562-22856658)
chr6 (40-77)||(7193336-7193373)
chr6 (41-89)||(14337558-14337606)
[»] chr4 (9 HSPs)
chr4 (42-227)||(23864573-23864757)
chr4 (51-114)||(52523942-52524005)
chr4 (40-77)||(9939384-9939421)
chr4 (41-77)||(11417686-11417722)
chr4 (41-89)||(21166376-21166424)
chr4 (41-77)||(29651345-29651381)
chr4 (41-89)||(30478308-30478356)
chr4 (41-77)||(47377611-47377647)
chr4 (41-89)||(48013316-48013364)
[»] chr7 (8 HSPs)
chr7 (56-225)||(43014591-43014759)
chr7 (41-105)||(41134294-41134358)
chr7 (39-75)||(37864089-37864125)
chr7 (40-77)||(37468908-37468945)
chr7 (41-89)||(38071897-38071945)
chr7 (41-77)||(38778853-38778889)
chr7 (41-77)||(41194512-41194548)
chr7 (138-186)||(42031302-42031350)
[»] chr2 (11 HSPs)
chr2 (137-225)||(8872493-8872581)
chr2 (40-89)||(30545436-30545485)
chr2 (41-89)||(44154275-44154323)
chr2 (42-89)||(30544727-30544774)
chr2 (41-89)||(37547997-37548045)
chr2 (42-89)||(44154983-44155030)
chr2 (40-89)||(19521918-19521967)
chr2 (41-77)||(1164789-1164825)
chr2 (41-89)||(4478850-4478898)
chr2 (41-77)||(14574012-14574048)
chr2 (41-77)||(21471016-21471052)
[»] chr3 (9 HSPs)
chr3 (137-225)||(39902736-39902824)
chr3 (41-89)||(3971903-3971951)
chr3 (41-89)||(3997927-3997975)
chr3 (42-77)||(19132825-19132860)
chr3 (42-89)||(31556188-31556235)
chr3 (42-89)||(31556217-31556264)
chr3 (41-77)||(36750450-36750486)
chr3 (35-91)||(38337476-38337532)
chr3 (41-89)||(43638079-43638127)
[»] chr1 (3 HSPs)
chr1 (40-89)||(43737979-43738028)
chr1 (41-77)||(48972458-48972494)
chr1 (41-77)||(51974436-51974472)
[»] scaffold0041 (1 HSPs)
scaffold0041 (42-89)||(27221-27268)
[»] chr5 (4 HSPs)
chr5 (42-89)||(39950433-39950480)
chr5 (41-77)||(8040194-8040230)
chr5 (41-77)||(8040457-8040493)
chr5 (41-77)||(8204119-8204155)
[»] chr8 (6 HSPs)
chr8 (58-185)||(22631324-22631450)
chr8 (56-94)||(38660090-38660128)
chr8 (39-77)||(41859307-41859345)
chr8 (42-91)||(43924490-43924539)
chr8 (49-77)||(11676980-11677008)
chr8 (41-77)||(44098434-44098470)
[»] scaffold0311 (1 HSPs)
scaffold0311 (41-77)||(173-209)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 22856349 - 22856534
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatannnnnnnnatgtggatggcttggatc 140  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||    
T  22856349 aggtgccgtttaatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaata-tttttttatgtggatgacttggatc 22856447  T
Q  141 tattacctgataatggtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattatgc 227  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||       ||||| ||||||||||||||||||||||||||||    
T  22856448 ttttacctgataatggtttgaaactttttgttggctattgtgtaacaaaaaaactgactccaccagactattaaaaaacaattatgc 22856534  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 33077572 - 33077756
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatannnnnnnnatgtggatggcttggatct 141  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||        |||||||||| ||||||||    
T  33077572 ggtgccgtttaatttgggaaagggaagttctttcccttgatggaaaagtttaataatagtcattgatttaatattttttt-atgtggatggtttggatct 33077670  T
Q  142 attacctgataatggtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattatgc 227  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  33077671 attacctcataatggtttgaaactttttgttggctattgtgtaacaaaaaaactgaccccaccagactattaaaaaacaattatgc 33077756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 255 - 351
Target Start/End: Original strand, 22856562 - 22856658
Alignment:
Q  255 atagagacaaggaaccccaacggcccccaaccaaactttgttgcttcttcttcttcttccagcaacatgctaatatattcctctctcagatcctttg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  22856562 atagagacaaggaaccccaacggcccccaaccaaactttgttgcttcttcttcttctttcaacaacatgctaatatattcctctctcagatcctttg 22856658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 7193336 - 7193373
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttccc 77  Q
    |||||||||||||||||||||||||  |||||||||||    
T  7193336 caggtgccatttaatttgggaaaggagagttctttccc 7193373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 14337606 - 14337558
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  || ||||||||| | |||||||||    
T  14337606 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 14337558  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 23864573 - 23864757
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatannnnnnnnatgtggatggcttggatct 141  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  23864573 ggtgccgtttaatttgggaaagggaagttctttctcttgatggaaaagtttaataatagcgattgatttaatattttttt-atgtggatggcttggatct 23864671  T
Q  142 attacctgataatggtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattatgc 227  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||       |||||| |||||||||||||||||||||||||||    
T  23864672 attacccgataatggtttaaaactttttgttggctattgtgtaacaaaaaaactgacctcaccagactattaaaaaacaattatgc 23864757  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 52524005 - 52523942
Alignment:
Q  51 taatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaata 114  Q
    |||| ||||||||| |||||||||||| ||||||||||| ||||| | |  |||||||||||||    
T  52524005 taatatgggaaaggaaagttctttcccatgatgggaaagtttaatgacattcattgatttaata 52523942  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 9939421 - 9939384
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttccc 77  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  9939421 caggtgccatttaatttgagaaaggggagttctttccc 9939384  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 11417686 - 11417722
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttccc 11417722  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 21166424 - 21166376
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||| ||||||  ||||||||||| | |||||||||    
T  21166424 aggtgccatttaatttgagaaaggagagttctttcccatcatgggaaag 21166376  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 29651381 - 29651345
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttccc 29651345  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 30478308 - 30478356
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  || ||||||||| | |||||||||    
T  30478308 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 30478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 47377647 - 47377611
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttccc 47377611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 48013316 - 48013364
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  || ||||||||| | |||||||||    
T  48013316 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 48013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 43014591 - 43014759
Alignment:
Q  56 tgggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatannnnnnnnatgtggatggcttggatctattacctgataatg 155  Q
    ||||||||  |||||||||| | ||||||||||| ||||||||||||||||||||||||        || |||||||||  ||||| |||| || |||||    
T  43014591 tgggaaagaaaagttctttctcatgatgggaaagtttaataatagccattgatttaatattttttt-atatggatggctcagatctgttacttggtaatg 43014689  T
Q  156 gtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattat 225  Q
    |||||||||||| |||||||||||| |||||       |||||||||||| |||||||||||||||||||    
T  43014690 gtttgaaactttttgttggctattgggtaacaaaaaagctgaccccaccaaactattaaaaaacaattat 43014759  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 41134294 - 41134358
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagcttaataatagccatt 105  Q
    ||||||| ||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  41134294 aggtgccgtttaatttgagaaaggaaagttattttccttgatgggaaagcttaataatagccatt 41134358  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 37864089 - 37864125
Alignment:
Q  39 ccaggtgccatttaatttgggaaagggaagttctttc 75  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37864089 ccaggtgccatttaatttgggaaaggaaagttctttc 37864125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 37468908 - 37468945
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttccc 77  Q
    |||||||||||||||||||||||||  |||||||||||    
T  37468908 caggtgccatttaatttgggaaaggagagttctttccc 37468945  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 38071897 - 38071945
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||| |||||||  ||||||||||| | |||||||||    
T  38071897 aggtgccatttaatttaggaaaggagagttctttcccatcatgggaaag 38071945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 38778853 - 38778889
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttccc 38778889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 41194512 - 41194548
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  41194512 aggtgccatttaatttgggaaaggagagttctttccc 41194548  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 42031350 - 42031302
Alignment:
Q  138 atctattacctgataatggtttgaaactttctgttggctattgtgtaac 186  Q
    |||| |||||| |||||||||||||||||| || ||| |||||||||||    
T  42031350 atctgttaccttataatggtttgaaactttttgatggttattgtgtaac 42031302  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 8872493 - 8872581
Alignment:
Q  137 gatctattacctgataatggtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattat 225  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||       |||||||||||| |||||||||||||||||||    
T  8872493 gatctgttacctggtaatggtttgatactttttgttggctattgtgtaacaaaaaacctgaccccaccaaactattaaaaaacaattat 8872581  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 30545485 - 30545436
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  30545485 caggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaag 30545436  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 44154275 - 44154323
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  44154275 aggtgccatttaatttgggaaagggaagttgtttcccatgatgtgaaag 44154323  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 30544727 - 30544774
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  30544727 ggtgccatttaatttgggaaatggaagttgtttcccatgatgggaaag 30544774  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 37547997 - 37548045
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||||||||||  ||||||||||| | |||||||||    
T  37547997 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 37548045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 44155030 - 44154983
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| ||||    
T  44155030 ggtgctatttaatttgggaaagggaagttgtttcccatgatggaaaag 44154983  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 19521967 - 19521918
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||||||||||  || ||||||||| | |||||||||    
T  19521967 caggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 19521918  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 1164825 - 1164789
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  1164825 aggtgccatttaatttgggaaaggagagttctttccc 1164789  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 4478850 - 4478898
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  || ||||||||| | |||||||||    
T  4478850 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 4478898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 14574048 - 14574012
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  14574048 aggtgccatttaatttgggaaaggagagttctttccc 14574012  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 21471016 - 21471052
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttccc 21471052  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 39902824 - 39902736
Alignment:
Q  137 gatctattacctgataatggtttgaaactttctgttggctattgtgtaacnnnnnnnctgaccccaccagactattaaaaaacaattat 225  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||       || |||||| || |||||||||||||||||||    
T  39902824 gatctgttacctggtaatggtttgatactttttgttggctattgtgtaacaaaaaaccttaccccatcaaactattaaaaaacaattat 39902736  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 3971951 - 3971903
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||||    
T  3971951 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaag 3971903  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 3997927 - 3997975
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||||    
T  3997927 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaag 3997975  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 19132860 - 19132825
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttccc 19132825  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 31556188 - 31556235
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||    
T  31556188 ggtgccatttaatttggaaaaggagagttctttcccatgatgggaaag 31556235  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  ||||||||||| | |||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 36750486 - 36750450
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttccc 36750450  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 38337532 - 38337476
Alignment:
Q  35 cccaccaggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagct 91  Q
    |||| |||||| | |||||||||||||||||||||| ||||||   |||||||||||    
T  38337532 cccaacaggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagct 38337476  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 43638127 - 43638079
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  || ||||||||| | |||||||||    
T  43638127 aggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaag 43638079  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 43738028 - 43737979
Alignment:
Q  40 caggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||||  ||||||||||| | |||||||||    
T  43738028 caggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 43737979  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 48972494 - 48972458
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  48972494 aggtgccatttaatttgggaaaggagagttctttccc 48972458  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 51974436 - 51974472
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttccc 51974472  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 27221 - 27268
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  ||||||||||| | |||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 27268  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 39950480 - 39950433
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaag 89  Q
    |||||||||||||||||||||||  ||||||||||| || ||||||||    
T  39950480 ggtgccatttaatttgggaaaggagagttctttcccatggtgggaaag 39950433  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 8040194 - 8040230
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  8040194 aggtgccatttaatttgggaaaggacagttctttccc 8040230  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 8040493 - 8040457
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    |||||||||||||||||||||||| || |||||||||    
T  8040493 aggtgccatttaatttgggaaaggaaatttctttccc 8040457  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 8204119 - 8204155
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttccc 8204155  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 22631324 - 22631450
Alignment:
Q  58 ggaaagggaagttctttcccttgatgggaaagcttaataatagccattgatttaatannnnnnnnatgtggatggcttggatctattacctgataatggt 157  Q
    ||||||| ||||||||| || ||||||||||  ||||| | | ||||||||||||||        || ||||||||   ||| ||||| ||| |||||||    
T  22631324 ggaaaggaaagttcttttccatgatgggaaaatttaatgacaaccattgatttaatattatttt-atatggatggcccagatttattatctgttaatggt 22631422  T
Q  158 ttgaaactttctgttggctattgtgtaa 185  Q
    |||||||||| ||||| |||||||||||    
T  22631423 ttgaaactttttgttgtctattgtgtaa 22631450  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 38660090 - 38660128
Alignment:
Q  56 tgggaaagggaagttctttcccttgatgggaaagcttaa 94  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  38660090 tgggaaagggaagttgtttcccttgatgggaaagtttaa 38660128  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 41859307 - 41859345
Alignment:
Q  39 ccaggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  41859307 ccaggtgccatttaatttgggaaaggagagttctttccc 41859345  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 43924490 - 43924539
Alignment:
Q  42 ggtgccatttaatttgggaaagggaagttctttcccttgatgggaaagct 91  Q
    |||| |||||||||||||||||||||||| ||||||   |||||||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagct 43924539  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 11676980 - 11677008
Alignment:
Q  49 tttaatttgggaaagggaagttctttccc 77  Q
    |||||||||||||||||||||||||||||    
T  11676980 tttaatttgggaaagggaagttctttccc 11677008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 44098470 - 44098434
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  44098470 aggtgccatttaatttgggaaaggagagttctttccc 44098434  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 209 - 173
Alignment:
Q  41 aggtgccatttaatttgggaaagggaagttctttccc 77  Q
    ||||||||||||||||||||||||  |||||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttccc 173  T

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