View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_139 (Length: 359)

Name: NF1345_low_139
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_139
NF1345_low_139
[»] chr1 (1 HSPs)
chr1 (2-350)||(36315114-36315465)
[»] chr8 (22 HSPs)
chr8 (125-350)||(19344454-19344679)
chr8 (124-350)||(19389897-19390123)
chr8 (125-291)||(19504652-19504818)
chr8 (125-334)||(19336766-19336975)
chr8 (127-349)||(19489443-19489664)
chr8 (119-306)||(19470107-19470294)
chr8 (119-306)||(19541031-19541218)
chr8 (119-306)||(19591480-19591667)
chr8 (124-309)||(19458413-19458598)
chr8 (124-309)||(19556091-19556276)
chr8 (119-322)||(19410120-19410323)
chr8 (119-322)||(19457139-19457342)
chr8 (119-322)||(19523736-19523939)
chr8 (125-322)||(19354801-19354995)
chr8 (132-322)||(19375930-19376120)
chr8 (125-300)||(19173419-19173597)
chr8 (231-350)||(19373462-19373581)
chr8 (127-322)||(19404064-19404256)
chr8 (127-322)||(19447846-19448041)
chr8 (127-322)||(19533035-19533230)
chr8 (124-168)||(19468341-19468385)
chr8 (119-168)||(19469168-19469217)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 350
Target Start/End: Original strand, 36315114 - 36315465
Alignment:
Q  2 acaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaaaggggtgatttctatcataaaaccacactactgtgccattaacatctatta 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36315114 acaccagagtaatctagtgataaaactgttgaatcttcttctgagtcaaagggatgatttctatcataaaaccacactactgtgccattaacatctatta 36315213  T
Q  102 caatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315214 caatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgt 36315313  T
Q  202 tgcattaacataaagactagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatg---aa 298  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  36315314 tgcattaacataaagactagtagtagtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaataa 36315413  T
Q  299 tattgtttcaaaacgaagagaaatgtactcaccaaacccgaaggagaataat 350  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36315414 tattgtttcaaaaagaagagaaatgtactcatcaaacccgaaggagaataat 36315465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 125 - 350
Target Start/End: Complemental strand, 19344679 - 19344454
Alignment:
Q  125 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 224  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   ||||||    
T  19344679 agacaatacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagtag 19344580  T
Q  225 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 324  Q
      ||| ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  19344579 aagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatat 19344480  T
Q  325 actcaccaaacccgaaggagaataat 350  Q
    ||| | | ||||||||||||||||||    
T  19344479 acttatcgaacccgaaggagaataat 19344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 19390123 - 19389897
Alignment:
Q  124 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 223  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   |||||    
T  19390123 aagacaatacttgtcttgtttagaacgtagcttggaattggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagta 19390024  T
Q  224 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatg 323  Q
    |  ||| ||||||||||||||||||||||||| | || |||||||||||||  | |||||||||||||  ||||  |||||||||||| ||||||||||     
T  19390023 gaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatgataattgtttcaaaaagaagagaaata 19389924  T
Q  324 tactcaccaaacccgaaggagaataat 350  Q
    ||||||| ||||||||| |||||||||    
T  19389923 tactcactaaacccgaacgagaataat 19389897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 125 - 291
Target Start/End: Original strand, 19504652 - 19504818
Alignment:
Q  125 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| || ||| ||||||||    
T  19504652 agacaatacttgtcttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatctttcgttgcattaccacaaatactagtag 19504751  T
Q  225 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgat 291  Q
    | ||||||||||||||||||||||||||||| | || |||||||||||||   || |||||||||||    
T  19504752 tagtactccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgat 19504818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 334
Target Start/End: Complemental strand, 19336975 - 19336766
Alignment:
Q  125 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 224  Q
    |||||| |||| ||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||| ||    
T  19336975 agacaaaactttccttgttcagaacatagcttggatttggaatttaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagcag 19336876  T
Q  225 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 324  Q
    | ||  ||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||  |||||||||||||||||| |||||||||| |    
T  19336875 tagtgttccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaatattgtttcaaaaagaagagaaatat 19336776  T
Q  325 actcaccaaa 334  Q
    ||| ||||||    
T  19336775 acttaccaaa 19336766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 127 - 349
Target Start/End: Complemental strand, 19489664 - 19489443
Alignment:
Q  127 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 226  Q
    |||||||||||||||||| ||||||||| |||| ||| || | | ||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||     
T  19489664 acaatacttgccttgtttggaacatagcttggatttgtaagtcactgtatcacctggcttcaaactatcacttgttgcattaacacaaatactcgtagta 19489565  T
Q  227 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtac 326  Q
    ||| || |||||||||| ||| ||||||||| | | |||||||||||| ||||||||||||||||   ||| ||||||||||||| |||||||||| |||    
T  19489564 gtattc-accacaaccaaaagcatatcaaaacagtctgtttctttattttaaagcttatcatgattgctgagtattgtttcaaaatgaagagaaatatac 19489466  T
Q  327 tcaccaaacccgaaggagaataa 349  Q
    ||||||||||| |||||| ||||    
T  19489465 tcaccaaaccccaaggagtataa 19489443  T

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Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 19470107 - 19470294
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19470107 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19470206  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 306  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19470207 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 19541031 - 19541218
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19541031 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19541130  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 306  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19541131 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 306
Target Start/End: Complemental strand, 19591667 - 19591480
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19591667 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19591568  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 306  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19591567 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 124 - 309
Target Start/End: Original strand, 19458413 - 19458598
Alignment:
Q  124 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19458413 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19458512  T
Q  224 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 309  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19458513 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 124 - 309
Target Start/End: Original strand, 19556091 - 19556276
Alignment:
Q  124 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19556091 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19556190  T
Q  224 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 309  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19556191 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 19410323 - 19410120
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19410323 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19410224  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 318  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19410223 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19410124  T
Q  319 aaat 322  Q
    ||||    
T  19410123 aaat 19410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 19457342 - 19457139
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19457342 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19457243  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 318  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19457242 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19457143  T
Q  319 aaat 322  Q
    ||||    
T  19457142 aaat 19457139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 322
Target Start/End: Original strand, 19523736 - 19523939
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19523736 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19523835  T
Q  219 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 318  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19523836 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19523935  T
Q  319 aaat 322  Q
    ||||    
T  19523936 aaat 19523939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 125 - 322
Target Start/End: Complemental strand, 19354995 - 19354801
Alignment:
Q  125 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 224  Q
    ||||||||| |||||||||||||||||||  ||||||| | ||  ||| ||||||||||| |||||||||| |||||||| |||||| |||  |||||||    
T  19354995 agacaatacatgccttgtttagaacataggttggaatttgcatccaatttatcacctggcctcaaactatcatttgttgctttaacacaaatgctagtag 19354896  T
Q  225 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 322  Q
    || |   |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||||||  ||||||||||||| |||| ||||||||||    
T  19354895 tgtt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaatattgtttaaaaaagaagagaaat 19354801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 322
Target Start/End: Complemental strand, 19376120 - 19375930
Alignment:
Q  132 acttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtact 231  Q
    ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| ||| ||  |    
T  19376120 acttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcagtagtgtt 19376021  T
Q  232 ccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 322  Q
    |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  19376020 ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaatattgtttcaaaaagaagagaaat 19375930  T

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Target: chr8; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 125 - 300
Target Start/End: Original strand, 19173419 - 19173597
Alignment:
Q  125 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagt-- 222  Q
    |||||| ||||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||||      
T  19173419 agacaaaacttgccttgtttagaacataacttggatttcgaattcaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagtag 19173518  T
Q  223 -agtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaata 300  Q
     ||| ||| ||||||||||||||||||||||||| | || |||||||||||||  |||||||||||||||  |||||||    
T  19173519 cagttgtattccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaata 19173597  T

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Target: chr8; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 19373581 - 19373462
Alignment:
Q  231 tccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtactcac 330  Q
    ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |||| |     
T  19373581 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatatactgat 19373482  T
Q  331 caaacccgaaggagaataat 350  Q
    | ||||||||||||||||||    
T  19373481 cgaacccgaaggagaataat 19373462  T

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Target: chr8; HSP #18
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 127 - 322
Target Start/End: Complemental strand, 19404256 - 19404064
Alignment:
Q  127 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 226  Q
    ||||||||| |||||||||||||||||  ||||||| | ||  ||| |||||||||||||||||||||| ||| |||| |||||| |||  ||||| |||    
T  19404256 acaatacttaccttgtttagaacataggttggaatttgcatccaatttatcacctggcttcaaactatcatttattgctttaacacaaatgctagtcgtg 19404157  T
Q  227 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 322  Q
     |   |||||||||||||| ||||||||| | || |||||||||||||  ||| |||||||| ||  |||||||||||||||||| ||||||||||    
T  19404156 tt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaatattgtttcaaaaagaagagaaat 19404064  T

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Target: chr8; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 322
Target Start/End: Complemental strand, 19448041 - 19447846
Alignment:
Q  127 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 226  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19448041 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19447942  T
Q  227 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 322  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19447941 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19447846  T

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Target: chr8; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 322
Target Start/End: Original strand, 19533035 - 19533230
Alignment:
Q  127 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 226  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19533035 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19533134  T
Q  227 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 322  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19533135 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19533230  T

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Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 19468341 - 19468385
Alignment:
Q  124 aagacaatacttgccttgtttagaacatagcgtggaattggaatt 168  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  19468341 aagacaaaacttgccttgtttagaacatagcgtggaattggaatt 19468385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 19469168 - 19469217
Alignment:
Q  119 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaatt 168  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19469168 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaatt 19469217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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