View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_14 (Length: 689)
Name: NF1345_low_14
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 52 - 660
Target Start/End: Original strand, 31997911 - 31998519
Alignment:
| Q |
52 |
atgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcatggtaa |
151 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
31997911 |
atgcctcgtggacgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcttggtca |
31998010 |
T |
|
| Q |
152 |
cagttggtttgtttatctttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaattagtttct |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31998011 |
cagttggtttgtttatctttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaattagtttct |
31998110 |
T |
|
| Q |
252 |
tacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactacaatgatat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
31998111 |
tacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaatgatgt |
31998210 |
T |
|
| Q |
352 |
tgtattcaacaaaggtcagatccatgctttaagatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagt |
451 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31998211 |
tgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagt |
31998310 |
T |
|
| Q |
452 |
atatcagatcacgttcgagtgaatactacaaatgggagtgcttcgtcagttggtatccttaaaatcaatattgatgcaggctgttttgaggatcatttca |
551 |
Q |
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| T |
31998311 |
atatctgatcacgttcgagtgaatactacaaatgggagtgcttcaccagttggtatccttaaaatcaatattcatgcaggctgttttgaggatcatttca |
31998410 |
T |
|
| Q |
552 |
cttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagctttgccggacattatgg |
651 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31998411 |
cttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagttttgccggacattatgg |
31998510 |
T |
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| Q |
652 |
gactgcgtt |
660 |
Q |
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||||||||| |
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| T |
31998511 |
gactgcgtt |
31998519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 615
Target Start/End: Original strand, 42612827 - 42612936
Alignment:
| Q |
507 |
tccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctgggg-ttgaaagcgtggaatcatgaagggatgctttctgcagctgcaac |
605 |
Q |
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|||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||| | | |||| ||||||||| || |||||||||||||||| |
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| T |
42612827 |
tccttaaaattaatattgatgcaggttgttttgaggaacatttcacttgttggggattgattgtgaggaaccatgaagggttggtttctgcagctgcaac |
42612926 |
T |
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| Q |
606 |
aaagagggag |
615 |
Q |
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| T |
42612927 |
aaagagggag |
42612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 15843038 - 15843120
Alignment:
| Q |
55 |
cctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgct |
137 |
Q |
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||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||| |||| ||||| |
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| T |
15843038 |
cctcgtggatgtggacttgcatagtaggagatggtcttgttggagggggcaatgtgcctctggagggaagtacattacctgct |
15843120 |
T |
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