View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_141 (Length: 353)
Name: NF1345_low_141
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_141 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 48 - 345
Target Start/End: Complemental strand, 17367547 - 17367260
Alignment:
| Q |
48 |
atggtgggtcggaagagacaaagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcat |
147 |
Q |
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| T |
17367547 |
atggtgggtcggaagagacaaagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgataaaggtgacccatgtttgtttcat |
17367448 |
T |
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| Q |
148 |
cattgatagctaacaataaaaatcaacgatagctaataaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagag |
247 |
Q |
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| T |
17367447 |
cattgatagctaacaacaaaa----------gctaacaaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagag |
17367358 |
T |
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| Q |
248 |
agcatgtatccaaatattaggaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttc |
345 |
Q |
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| T |
17367357 |
agcatgtatccaaatattaggaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttc |
17367260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 17361245 - 17361141
Alignment:
| Q |
49 |
tggtgggtcggaagagacaaagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcatc |
148 |
Q |
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|||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||| || |||||||||||||| |
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| T |
17361245 |
tggtggttcggaggagacaaagagtgattttagggttatgatgaaggtgaaaaatagtgacttgaggattctgatgaaggtggccaatgtttgtttcatc |
17361146 |
T |
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| Q |
149 |
attga |
153 |
Q |
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| T |
17361145 |
attga |
17361141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 9494789 - 9494839
Alignment:
| Q |
287 |
gaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaat |
338 |
Q |
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| T |
9494789 |
gaacatggtgatttccatccag-tcaaagtttatatttttccatctttaaat |
9494839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 3448896 - 3448938
Alignment:
| Q |
299 |
ttccatgcaaatcaaagtttatatttttccatctttaaatatt |
341 |
Q |
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| T |
3448896 |
ttccatccaagtcaaagcttatatttttccatctttaaatatt |
3448938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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