View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_144 (Length: 349)
Name: NF1345_low_144
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_144 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 5443270 - 5442925
Alignment:
| Q |
1 |
tcaatactaaattgatgacaattcattcatattcatatt------gtaatataattgtttaaaggagggccaactgggatttccttttgttaaaatgcac |
94 |
Q |
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| T |
5443270 |
tcaatactaaattgatgacaattcattcatattcatattcatattgtaatataattgtttaaaggagggctaactgggatttccttttgttaaaatgcac |
5443171 |
T |
|
| Q |
95 |
atcctgattttttcttcttctctaagctttctttaaaatatatgtgcatgcatgcactttgttttttatattgtgtttggtggagatttgaactaattgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5443170 |
atcctgattttttcttcttctctaagctttctttaaaatatatgtgcatgcatgcactttgttttttatattgtgtttggtggagatttgaattaattgt |
5443071 |
T |
|
| Q |
195 |
catcattcactatcaaagaagaaaatgc---acgcctaaagttattattatataggtcaaatatcttatatgatcagataagttaaaagattctaacata |
291 |
Q |
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|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || |
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| T |
5443070 |
catcattcactatcaaagaagaaaatgcacaacaccccaagttattattatataggtcaaatatcttatgtgatcatataagttaaaagattgtaacgta |
5442971 |
T |
|
| Q |
292 |
ttaatctttcaatgtttccttataacaaattagtctttgaatttgt |
337 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
5442970 |
ttaatctttcaatgtttccttataataaattagtccttgaatttgt |
5442925 |
T |
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