View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_145 (Length: 347)
Name: NF1345_low_145
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_145 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 83 - 318
Target Start/End: Complemental strand, 10679454 - 10679219
Alignment:
| Q |
83 |
tcataggagcatgttttcatgtggcatgggcactttgggtttatttggtggttatgttgttacttataggaacaattattggtttgactatatttggatt |
182 |
Q |
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| T |
10679454 |
tcataggagcatgttttcatgtggcatgggcactttgggtttatttggtggttatgttgttacttataggaacaattattggtttgactatatttggatt |
10679355 |
T |
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| Q |
183 |
tgttgtgactactcaaggtgggggtgttgaagtgcctggtagaacttatatggagtatcatcttcaaaattattcaccttggttgaagaaaaggattaag |
282 |
Q |
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| T |
10679354 |
tgttgtgactactcaaggtgggggtgttgaagtgcctggtagaacttatatggagtatcatcttcaaaattattcaccttggttgaagaaaaggattaag |
10679255 |
T |
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| Q |
283 |
gatcatcaatattggagtactattaagagttgtatt |
318 |
Q |
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| T |
10679254 |
gatcatcaatattggagtactattaagagttgtatt |
10679219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 94 - 319
Target Start/End: Complemental strand, 42969794 - 42969569
Alignment:
| Q |
94 |
tgttttcatgtggcatgggcactttgggtttatttggtggttatgttgttacttataggaacaattattggtttgactatatttggatttgttgtgacta |
193 |
Q |
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| T |
42969794 |
tgttttcatgttgcatgtgcactatggttgtacttggtgattatgttattgctaatagtagcactattaggtttgactatatttggttttggtgtgacta |
42969695 |
T |
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| Q |
194 |
ctcaaggtgggggtgttgaagtgcctggtagaacttatatggagtatcatcttcaaaattattcaccttggttgaagaaaaggattaaggatcatcaata |
293 |
Q |
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| T |
42969694 |
gtaaaggtggtggtgtagaagtgcctggtagatcttatagtgagtatcatcttacagattattcaccttggttgaagaaaagaatacaagatcctcgtta |
42969595 |
T |
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| Q |
294 |
ttggagtactattaagagttgtattt |
319 |
Q |
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| T |
42969594 |
ttggaatactataaagaattgtattt |
42969569 |
T |
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