View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_146 (Length: 345)

Name: NF1345_low_146
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_146
NF1345_low_146
[»] chr4 (9 HSPs)
chr4 (29-345)||(4078739-4079054)
chr4 (47-201)||(47748323-47748477)
chr4 (200-317)||(12607277-12607394)
chr4 (44-120)||(50076768-50076844)
chr4 (203-271)||(21678750-21678818)
chr4 (44-108)||(50076066-50076130)
chr4 (212-252)||(14643486-14643526)
chr4 (209-252)||(47204371-47204414)
chr4 (258-328)||(56079006-56079076)
[»] chr3 (6 HSPs)
chr3 (44-201)||(41405923-41406080)
chr3 (220-328)||(3400089-3400197)
chr3 (44-130)||(7219452-7219538)
chr3 (237-310)||(22450129-22450202)
chr3 (209-310)||(40199892-40199993)
chr3 (145-204)||(7219393-7219452)
[»] chr8 (3 HSPs)
chr8 (44-204)||(8865134-8865294)
chr8 (47-206)||(25584507-25584666)
chr8 (252-297)||(15986358-15986403)
[»] chr5 (7 HSPs)
chr5 (203-328)||(16842502-16842627)
chr5 (209-326)||(18311992-18312109)
chr5 (200-269)||(24549987-24550056)
chr5 (200-298)||(24509948-24510046)
chr5 (47-99)||(5323885-5323937)
chr5 (46-198)||(34540900-34541052)
chr5 (260-326)||(41136090-41136156)
[»] chr6 (7 HSPs)
chr6 (47-188)||(10795403-10795543)
chr6 (68-198)||(20820731-20820860)
chr6 (200-272)||(13281106-13281178)
chr6 (203-306)||(30630938-30631040)
chr6 (44-200)||(15581691-15581848)
chr6 (210-272)||(3322604-3322666)
chr6 (200-275)||(13483792-13483867)
[»] scaffold0161 (1 HSPs)
scaffold0161 (200-305)||(5579-5683)
[»] chr2 (2 HSPs)
chr2 (200-328)||(35655878-35656006)
chr2 (46-163)||(5292116-5292233)
[»] chr7 (3 HSPs)
chr7 (252-310)||(9419182-9419240)
chr7 (200-272)||(17881836-17881908)
chr7 (220-272)||(6004358-6004412)
[»] chr1 (1 HSPs)
chr1 (208-299)||(9375692-9375782)
[»] scaffold0005 (1 HSPs)
scaffold0005 (212-252)||(173766-173806)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 4078739 - 4079054
Alignment:
Q  29 catagggaaaaacttagtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttca 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4078739 catagggaaaatcttagtttcatcattatgctaatgagttagagattattcgagattt-atgcaaaaagattagacaatatctcttcatcacacccttca 4078837  T
Q  129 cgaagggaatgcttgtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggcagtgaacaaggtgtgttcacat 228  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4078838 cgaagggaatacttgtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggcagtgaacaaggtgtgttcacat 4078937  T
Q  229 aagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaaccggattacaaaatctctt 328  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4078938 aagactaggaactgatactattgagagttaatttcctttcttgacatgaatgcctccagatgtaggtgacgtagcatcgaaccggattacaaaatctctt 4079037  T
Q  329 atgctattttttatcgc 345  Q
     ||||||||||||||||    
T  4079038 gtgctattttttatcgc 4079054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 47748477 - 47748323
Alignment:
Q  47 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 146  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||| || |||||||||||||||||  ||| ||||||||||||||||||    
T  47748477 ttcatcattatgcgaatgagctagagattattagagatttcatgaaaaaagattgaacgatatctcttcatcacacttttcgcgaagggaatgcttgtgc 47748378  T
Q  147 agatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaa 201  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  47748377 agatgtgctagcaaagttggaagctattcacgtagatcctctaattgtgcttcaa 47748323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 12607394 - 12607277
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacg 299  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||||| ||| |  |||||||||||||||||| ||||||||||||||||||||||    
T  12607394 aagaggcactgaacaaggtttgttcacataagactaggaactaatactatttagaatggatttcctttcttggcatggatgcctccagatgtaggtgacg 12607295  T
Q  300 tagcaccgaaccggatta 317  Q
    | ||||||||| ||||||    
T  12607294 ttgcaccgaactggatta 12607277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 50076768 - 50076844
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcac 120  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  50076768 agtttcatcattatgctaatgagctagagattattagagatttcatgaaaaaagattggacaatagctctgcatcac 50076844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 21678750 - 21678818
Alignment:
Q  203 aggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttg 271  Q
    |||| |||||||| || |||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  21678750 aggcggtgaacaaagtttgttcacataagactaggaactaatactattgagagtgaatttcctatcttg 21678818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 50076066 - 50076130
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaata 108  Q
    ||||||||||||||| ||| ||  ||||||||||| ||||||||||| |||||||||||||||||    
T  50076066 agtttcatcattatgttaaagaactagagattattagagatttcatgaaaaaagattggacaata 50076130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 14643526 - 14643486
Alignment:
Q  212 acaaggtgtgttcacataagactaggaacttatactattga 252  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  14643526 acaaggtttgttcacataagactaggaactgatactattga 14643486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 47204414 - 47204371
Alignment:
Q  209 tgaacaaggtgtgttcacataagactaggaacttatactattga 252  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  47204414 tgaacaatgtgtgttcatataagactaggaactaatactattga 47204371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 56079076 - 56079006
Alignment:
Q  258 aatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaaccggattacaaaatctctt 328  Q
    |||| ||||||||||||||  || ||||||||||||||||||| |||| |||| || |||  |||||||||    
T  56079076 aattccctttcttggcatggttgtctccagatgtaggtgacgttgcacagaactgggttatcaaatctctt 56079006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 41405923 - 41406080
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttg 143  Q
    ||||||| |||||||||||||||   ||||||||| ||||||||||| ||| |||||| ||| ||||||||||||||||| ||| |||||||||||||||    
T  41405923 agtttcaacattatgctaatgagcccgagattattagagatttcatgaaaatagattgaacattatctcttcatcacacctttcgcgaagggaatgcttg 41406022  T
Q  144 tgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaa 201  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||    
T  41406023 tgcagatgtgctagtaaagttgggagctattgacgtagatcctttaattgtgcttcaa 41406080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 3400089 - 3400197
Alignment:
Q  220 tgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaaccggattaca 319  Q
    |||||||||||||||||||||| || |||||||||||  |||||||||||||||||| |||||||||||||||||||| || ||||||||  || ||||     
T  3400089 tgttcacataagactaggaactaatgctattgagagtggatttcctttcttggcatggatgcctccagatgtaggtgatgttgcaccgaattgggttacc 3400188  T
Q  320 aaatctctt 328  Q
    |||||||||    
T  3400189 aaatctctt 3400197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 7219538 - 7219452
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacg 130  Q
    |||||| |||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7219538 agtttcgtcattatgctaatgagctagcgtttattagagatttcatgcaaaaagattggacaatatctcttcatcacacctttcacg 7219452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 22450129 - 22450202
Alignment:
Q  237 gaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaac 310  Q
    ||||| |||||||||||||| ||||||||||||| ||||| || |||  |||||||||||  || |||||||||    
T  22450129 gaactaatactattgagagtaaatttcctttcttcgcatggatccctttagatgtaggtggtgttgcaccgaac 22450202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 40199993 - 40199892
Alignment:
Q  209 tgaacaaggtgtgttcacataagactag--gaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcacc 306  Q
    |||||||||| |||||| ||||||||||  ||||| |||||||||||||| |||||| |||| |||  |||| ||| ||||| |||||| |||| |||||    
T  40199993 tgaacaaggtttgttcatataagactagacgaactaatactattgagagtgaatttcatttcatgg-gtgaaagcccccaga-gtaggttacgttgcacc 40199896  T
Q  307 gaac 310  Q
    ||||    
T  40199895 gaac 40199892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 7219452 - 7219393
Alignment:
Q  145 gcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagag 204  Q
    |||||||||||| |||||||| ||||||||||   ||||||||||||| || ||||||||    
T  7219452 gcagatgtgctaacaaagttgagagctattaaatgagatcctctatttatgtttcaagag 7219393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 8865294 - 8865134
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttg 143  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||| ||||||| |||||||||| | ||||||||||| |||  ||||||||||||||    
T  8865294 agtttcatcattatgctaatgagttagaaattattaaagatttcatgaaaaaagaatggacaatatttattcatcacacctttcgtgaagggaatgcttg 8865195  T
Q  144 tgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagag 204  Q
    |||||| |||||||||||||||| ||||  |||||||||||||||| || | |||||||||    
T  8865194 tgcagacgtgctagcaaagttggaagcttctaacgtagatcctctaattatacttcaagag 8865134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 25584507 - 25584666
Alignment:
Q  47 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 146  Q
    |||||||||||  ||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||| || |||| |    
T  25584507 ttcatcattatcataatgagctacagattattagagatttcatgcaaaaagattggacaataactcttcatcacacctttcgcgaaaggagtgtttgtac 25584606  T
Q  147 agatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggc 206  Q
    | || ||| ||||||| |||||||||||| ||| ||||||||| |||||||||| |||||    
T  25584607 aaatatgcaagcaaagctgggagctattatcgttgatcctctaattgtgcttcaggaggc 25584666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 15986358 - 15986403
Alignment:
Q  252 agagttaatttcctttcttggcatgaatgcctccagatgtaggtga 297  Q
    ||||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  15986358 agagtgaatttcctttcttggcatggatgcctccatatgtaagtga 15986403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 16842627 - 16842502
Alignment:
Q  203 aggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtag 302  Q
    |||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |    
T  16842627 aggcagtgaacaaggtttgttcacataagactagaaactaatattattgagagtgaatttcctttcttggcatggatgcctccagatgtaggtgacgttg 16842528  T
Q  303 caccgaaccggattacaaaatctctt 328  Q
    |||||||| ||||||| |||||||||    
T  16842527 caccgaactggattaccaaatctctt 16842502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 18312109 - 18311992
Alignment:
Q  209 tgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccga 308  Q
    |||| ||||| |||||||||||||||||||| | ||||||||| |||   ||||  |||||||||||| ||| |||||||||||||| |||| |||||||    
T  18312109 tgaataaggtttgttcacataagactaggaattgatactattgggagagtattttttttcttggcatggatgtctccagatgtaggtaacgttgcaccga 18312010  T
Q  309 accggattacaaaatctc 326  Q
    || | ||||| |||||||    
T  18312009 actgcattaccaaatctc 18311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 24550056 - 24549987
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttct 269  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||| ||||||||||  |||||||||||    
T  24550056 aagaggcagtgaacaaagtttgttcacataagactagaaactgatattattgagagtggatttcctttct 24549987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 24510046 - 24509948
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaa-tttcctttcttggcatgaatgcctccagatgtaggtgac 298  Q
    |||||| |||||||||||| |||| ||||||||||||||||| |||||||||||| | || |||  ||||||||  |||||||| ||| |||||||||||    
T  24510046 aagaggaagtgaacaaggtttgttaacataagactaggaactgatactattgagaatgaatttttttttcttgg-ttgaatgcccccaaatgtaggtgac 24509948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 5323885 - 5323937
Alignment:
Q  47 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagat 99  Q
    ||||||| |||||||||||  ||||||||||| ||||||||||||||||||||    
T  5323885 ttcatcactatgctaatgaaatagagattatttgagatttcatgcaaaaagat 5323937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 34540900 - 34541052
Alignment:
Q  46 tttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtg 145  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| || ||| ||||    |||| | ||||||||||| |||   ||||||||  |||||    
T  34540900 tttcatcaccatgctaatgagttagagattattagagatttcatacagaaatattgtgtcatatttgttcatcacacctttcgtaaagggaatatttgtg 34540999  T
Q  146 cagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgctt 198  Q
    || || | |||| |||| |||||  ||||||| |||||| |||| || |||||    
T  34541000 catattttctagaaaagatgggatatattaacttagatcttctaattatgctt 34541052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 41136156 - 41136090
Alignment:
Q  260 tttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaaccggattacaaaatctc 326  Q
    ||||||||||||| ||| || || ||||||||||||||| | ||||||||| ||||||| |||||||    
T  41136156 tttcctttcttggtatggatacccccagatgtaggtgacattgcaccgaactggattaccaaatctc 41136090  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 10795403 - 10795543
Alignment:
Q  47 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 146  Q
    |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||| |||||| |||| |||||| || |||||| || ||||||||  ||    
T  10795403 ttcatcattatgctaatgagctagagattataagagatttcatgaaaaaagattgaacaatagctctgcatcacgcctttcacg-agagaatgcttacgc 10795501  T
Q  147 agatgtgctagcaaagttgggagctattaacgtagatcctct 188  Q
    ||||||||||||||||||   ||||||||| |||||||||||    
T  10795502 agatgtgctagcaaagttaaaagctattaaagtagatcctct 10795543  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 20820860 - 20820731
Alignment:
Q  68 tagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgcagatgtgctagcaaagttggg 167  Q
    ||||||||||| ||  ||||||| |||||||||| ||||||||||||||||||||| |||  ||||| |||||||||||| || |||||||||||||| |    
T  20820860 tagagattattggaattttcatgaaaaaagattgaacaatatctcttcatcacacctttcgtgaaggaaatgcttgtgca-atatgctagcaaagttgag 20820762  T
Q  168 agctattaacgtagatcctctatttgtgctt 198  Q
    ||||| |||||||||| ||||| ||||||||    
T  20820761 agctactaacgtagattctctaattgtgctt 20820731  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 13281106 - 13281178
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 272  Q
    |||||| | |||||||||| |||||||||  ||||||||||| |||||||||||||| |||||||||||||||    
T  13281106 aagaggtaatgaacaaggtttgttcacatgtgactaggaactgatactattgagagtgaatttcctttcttgg 13281178  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 30631040 - 30630938
Alignment:
Q  203 aggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtag 302  Q
    ||||||||||||||||  |||||||||||||||  |||   ||||||  ||||| ||||| |||| ||| |||||||||||||| ||||||||||||| |    
T  30631040 aggcagtgaacaaggttagttcacataagactacaaaccagtactata-agagtgaattttctttgttgacatgaatgcctccaaatgtaggtgacgttg 30630942  T
Q  303 cacc 306  Q
    ||||    
T  30630941 cacc 30630938  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 15581691 - 15581848
Alignment:
Q  44 agtttcatcattatgctaatgagttagagattattcgagattt-catgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgctt 142  Q
    |||||||||||||||||||| || ||||||| |||  | |||| | | || | |||||||||||||| ||| ||||||||| |||  ||||| |||||||    
T  15581691 agtttcatcattatgctaataagctagagataattataaattttcttacatagagattggacaatatatctccatcacacctttcgtgaaggaaatgctt 15581790  T
Q  143 gtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttca 200  Q
     ||  |||||| || ||||| | ||| ||| ||| ||||||| |||| ||||||||||    
T  15581791 atgatgatgtgttatcaaagctcggaactaataatgtagatcatctaattgtgcttca 15581848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 3322666 - 3322604
Alignment:
Q  210 gaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 272  Q
    |||||||||  ||||| |||| ||||| |||| |||||||||||||| |||||||||||||||    
T  3322666 gaacaaggttggttcatataaaactagaaactaatactattgagagtgaatttcctttcttgg 3322604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 13483867 - 13483792
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcat 275  Q
    ||||| || |||||||||| ||||||||||||| || ||||| |||| |||||| || || || ||||||||||||    
T  13483867 aagagacaatgaacaaggtttgttcacataagattaagaactgataccattgagtgtgaactttctttcttggcat 13483792  T

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Target: scaffold0161 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 5579 - 5683
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacg 299  Q
    ||||| ||||||||||||| || ||||||||||||| ||||| |||||||||| ||| || |||||||||||||||| ||||||| | ||||| ||||||    
T  5579 aagagacagtgaacaaggtttgctcacataagactatgaactaatactattgaaagtgaa-ttcctttcttggcatggatgcctctaaatgtaagtgacg 5677  T
Q  300 tagcac 305  Q
    | ||||    
T  5678 ttgcac 5683  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 35656006 - 35655878
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacg 299  Q
    |||||| |||||||||||| |||||||||||||||||||| | |||||||| ||||| |||||| ||| ||||   || | ||  |||||||||||||||    
T  35656006 aagaggaagtgaacaaggtttgttcacataagactaggaattgatactatttagagtgaatttctttttttgggtggattcccctcagatgtaggtgacg 35655907  T
Q  300 tagcaccgaaccggattacaaaatctctt 328  Q
    | | |||||||  | |||| |||||||||    
T  35655906 ttgtaccgaacaaggttaccaaatctctt 35655878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 5292233 - 5292116
Alignment:
Q  46 tttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtg 145  Q
    ||||||||| |||||||||||  |||||||||| ||||||||||| | |||||||| |  |||| | |||  |||||  ||| | |||||| || ||||     
T  5292233 tttcatcatcatgctaatgagccagagattattagagatttcatgtacaaagattgtatcatatattttcgccacacgtttcgctaagggagtgtttgta 5292134  T
Q  146 cagatgtgctagcaaagt 163  Q
    ||||||| ||||||||||    
T  5292133 cagatgtactagcaaagt 5292116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 9419182 - 9419240
Alignment:
Q  252 agagttaatttcctttcttggcatgaatgcctccagatgtaggtgacgtagcaccgaac 310  Q
    ||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||||||    
T  9419182 agagtgaatttcttttcttggcatggatgcctcgagatgtaggtgacgttgcaccgaac 9419240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 17881908 - 17881836
Alignment:
Q  200 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 272  Q
    |||||||||||| |||||| ||||||||||||| ||||| || |||||||||||| |  ||||||||| ||||    
T  17881908 aagaggcagtgaccaaggtttgttcacataagagtaggagctaatactattgagaatagatttcctttgttgg 17881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 6004412 - 6004358
Alignment:
Q  220 tgttcacataagactagg--aacttatactattgagagttaatttcctttcttgg 272  Q
    |||||| |||||||||||  |||| |||||||||||||| |||||||||||||||    
T  6004412 tgttcatataagactaggtgaactaatactattgagagtgaatttcctttcttgg 6004358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 9375692 - 9375782
Alignment:
Q  208 gtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatgaatgcctccagatgtaggtgacg 299  Q
    |||||||| || |||||||||||||||| ||||| |||||||||||||   ||||||||||| ||  ||||| || |||||| |||||||||    
T  9375692 gtgaacaaagtttgttcacataagactaagaactaatactattgagagggtatttcctttctagg-gtgaatacccccagatataggtgacg 9375782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 173766 - 173806
Alignment:
Q  212 acaaggtgtgttcacataagactaggaacttatactattga 252  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  173766 acaaggtttgttcacataagactaggaactgatactattga 173806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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