View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_15 (Length: 682)

Name: NF1345_low_15
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_15
NF1345_low_15
[»] chr1 (1 HSPs)
chr1 (10-672)||(44973530-44974189)


Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 10 - 672
Target Start/End: Original strand, 44973530 - 44974189
Alignment:
Q  10 aagaatataatgagttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaata 109  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  44973530 aagaaaataatgagttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactatata----agtgctgattgcttgtaata 44973625  T
Q  110 cagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973626 cagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatc 44973725  T
Q  210 atccacaccaacgttatacattcc-aacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 308  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973726 atccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 44973825  T
Q  309 tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaactccatcatt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44973826 tatggaaaaccaaccatcaccacttccaccaaaaacatacaaactaacagcaacttcaatctcttactccaaaaacctacaaacaaacaacaccatcatt 44973925  T
Q  409 gcaccatttctcttcttcaaacattgtacaccaannnnnnnaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg 508  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973926 gcaccatttctcttcttcaaacattgtacaccaacccccccaaactacatcctcaaagatgtttccctcacagcatacccttctgagattcttgccattg 44974025  T
Q  509 ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttcccttaactcttcacctatcac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44974026 ttggtccaagtggtgcaggaaaatcaactcttctagacattctttcagctagaagattacccttaagtggtacactttctcttaactcttcacctatcac 44974125  T
Q  609 taacccttccacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg 672  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974126 taacccttctacattcagaaaactctctgcttatgttcctcaacatgatgcatgtcttcctatg 44974189  T

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