View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_154 (Length: 336)
Name: NF1345_low_154
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 25467722 - 25467828
Alignment:
| Q |
129 |
catgagctatccaaaaaatatttcttcaaataacatgcctcatccagaaatgtgaccaaccaagcaactactatttt----atacattatttgctttgtt |
224 |
Q |
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| T |
25467722 |
catgagctatccaaaaaatatttcttcaaataacatgcctcatccaaaaatgtgaccaaccaagcaactactattttatacatacattatttgctttgtt |
25467821 |
T |
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| Q |
225 |
tgtataa |
231 |
Q |
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| T |
25467822 |
tctataa |
25467828 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 25467982 - 25468052
Alignment:
| Q |
227 |
tataaatgtttactggtggacacacaatatcattatcagttctctcgccaatttgatttttccttggaaatcaattt |
303 |
Q |
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|||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
25467982 |
tataaatgtttactggtggacacatagtatc------agttctctcgccaattggatttttccctggaaatcaattt |
25468052 |
T |
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