View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_157 (Length: 335)
Name: NF1345_low_157
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_157 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 31456492 - 31456727
Alignment:
| Q |
89 |
agatgcgtgcccctatttctagaaaactatgcactctcagctccaatattctttcacatttacaaaacaatgcaaagaaaaacctttcatctatcaaaat |
188 |
Q |
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| T |
31456492 |
agatgcgtgcccctatttctagaaaactatgcactctcagctccaatattctttcacatttacaaaacaatgcaaagaaaaacctttcatctatcaaaat |
31456591 |
T |
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| Q |
189 |
ttcacctcattatgaagaaacccatcaccattttcattctgacctgaacctatcaaccctcaaacacaatcatgttccacccccaggtactaaaaacaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31456592 |
ttcacctcattatgaagaaacccatcaccattttcattctgacctgaacctatcaaccctcaaacacaatcatgttccacccccaggtactaaaaacaca |
31456691 |
T |
|
| Q |
289 |
taaagtttcaatttttataccgacccacattttcat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31456692 |
taaagtttcaatttttataccgacccacattttcat |
31456727 |
T |
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