View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_16 (Length: 657)
Name: NF1345_low_16
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 101 - 492
Target Start/End: Complemental strand, 31827085 - 31826691
Alignment:
| Q |
101 |
catttgtctaggaataaaatccaagtagtaaattatcccctatgctatgcatgtgtttt-----tagtacgtttcataacatcactttcagtgatgcctt |
195 |
Q |
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| T |
31827085 |
catttgtctaggaataaaatccaagaagtaaattatcccctatgctatgcatgtgttttgtttttagtacgtttcataacatcactttcagtgatgcctt |
31826986 |
T |
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| Q |
196 |
gtgaaagtcatgtagttgatgtcaactattttcgtgtctatttgtaatacattgcagggagtgtttggctttccaagatgaatgttgaaagcagcagcct |
295 |
Q |
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| T |
31826985 |
gtgaaagtcatgtagttgatgtcaactattttcgtgtctatttgtaatacactgcagggagtgtttggctttccaagatgaatgttgaaagcagcagcct |
31826886 |
T |
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| Q |
296 |
gctgtgcaggtggttcatgcccatcatgattt--tacactcagcatcataaaatgttcaagaaacttatcttcagnnnnnnnnatgtgggtaatgttaga |
393 |
Q |
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| T |
31826885 |
gctgtgcaggtggtacatgcccatcatgattttgtttactcagcatcataaaatgttcaagaaacatatcttcagttttt----tgtgggtaatgttaga |
31826790 |
T |
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| Q |
394 |
ttcgtccttatatatatcactcatcctctaatgacaaattataaatttgcgtttctttttagagacaaattacttattacctttgcaacaagaaacaga |
492 |
Q |
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| T |
31826789 |
ttcgtccttatatatatcactcatcctctaatgacaaattataaatttgcgtttctttttagagacaaattacttattacctttgcaacaagaaacaga |
31826691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 490 - 625
Target Start/End: Complemental strand, 31826615 - 31826487
Alignment:
| Q |
490 |
agaggattgaaaaaacttttaccacaaacaaattatacccaatagtggnnnnnnncttcttccataaatcaggattatttattattcctgagt----gct |
585 |
Q |
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| T |
31826615 |
agaggattgaaaaaacttttaccacaaacaaattatacccaatagtagtttttttcttcttccataa-----------ttattattcctgagtgctagct |
31826527 |
T |
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| Q |
586 |
aaatgtggaaaacttcattcccattagacgggaatcaatt |
625 |
Q |
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| T |
31826526 |
aaatgtggaaaacttcattcccattagacgggaatcaatt |
31826487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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