View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_161 (Length: 331)
Name: NF1345_low_161
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_161 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 16401251 - 16401354
Alignment:
| Q |
217 |
tacaaaaagttcattacaaaatcaaaacactgaacaaaacaccaaccaactgcaacactaagtcataaaacccatacataaaataggattgcaccaccaa |
316 |
Q |
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| T |
16401251 |
tacaaaaagttcattacaaaatcaaaacactgaacaaaacaccaaccaactgcaacactaagtcataaaacccatacataaaataggattgcgccaccaa |
16401350 |
T |
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| Q |
317 |
agcc |
320 |
Q |
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|||| |
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| T |
16401351 |
agcc |
16401354 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 15456372 - 15456316
Alignment:
| Q |
15 |
aaaatttgtaggatcttctctatcaacaacaagaacaatcctactttctaccttcaa |
71 |
Q |
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|||||||||||| || |||||||| ||| |||||||||| |||||| || ||||||| |
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| T |
15456372 |
aaaatttgtagggtcatctctatccacagcaagaacaattctacttcctcccttcaa |
15456316 |
T |
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