View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_164 (Length: 324)

Name: NF1345_low_164
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_164
NF1345_low_164
[»] chr5 (1 HSPs)
chr5 (1-295)||(33372333-33372624)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 33372624 - 33372333
Alignment:
Q  1 caaaaaactgattatacaatgaattaacatgccattgagnnnnnnnnnnctttcaagcaaattgtcatttttgaattgtattctaaaaaatatattatct 100  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33372624 caaaaaactgattatacaatgaattaacatgccattgagtttttttt---tttcaagcaaattgtcatttttgaattgtattctgaaaaatatattatct 33372528  T
Q  101 gaaaagcctttagttgtattatattctgtttgactatattttcttaaaatgtttaagcaataaaaattacaatttgcattgttttagttagactttgtgt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33372527 gaaaagactttagttgtattatattctgtttgactatattttcttaaaatgtttaagcaataaaaattacaatttgcattgttttagttagactttgtgt 33372428  T
Q  201 ttccagaaaaagttatacgcacattataatacatcacatttattttcttcttcattttacaatggaagaatgaaatattgatatattttagtttg 295  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33372427 ttccagaaaaagttataagcacattataatacatcacaattattttcttcttcattttacaatggaagaatgaaatattgatatattttagtttg 33372333  T

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