View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_169 (Length: 319)
Name: NF1345_low_169
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_169 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 2041244 - 2041529
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttg |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041244 |
taacatctccaaggtattttacattatcaatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttg |
2041343 |
T |
|
| Q |
124 |
aaacaaaagcagtgatgatgatggcttctttctcgcagatacttcatcccttctcatcgtaatagcaagattccttcgaaacaaaagcagtggatcgaaa |
223 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2041344 |
aaacaaaagcaccgatgatgatggcttctttctcgcagatacttcgtcccttctcatcgtaatagctagattccttcgaaacaaaagcagtggatcgaaa |
2041443 |
T |
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| Q |
224 |
acaaaggaacaaaaactcaacgagtaaaagtattagatatgtttttcactgcaaccctaatggattttaacctatatatagtataa |
309 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2041444 |
acaaaggaacaaaaactcaatgagtaaaagtattagatatgtttttcactgcaaccctaatggcttttaacctatatatagtataa |
2041529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 1352413 - 1352250
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352413 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttg |
1352314 |
T |
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| Q |
124 |
aaacaaaagcagtgatgatgatggcttctttctcgcagatacttcatcccttctcatcgtaata |
187 |
Q |
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| T |
1352313 |
aaacaaaagcaccgatgatgatggcttccttctcgcagatatttcatctcttctcatcataata |
1352250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 1357534 - 1357444
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
1357534 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 1364364 - 1364328
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagcttt |
60 |
Q |
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| T |
1364364 |
taacatctccaaggtattttacattatcaatagcttt |
1364328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 36717446 - 36717295
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
36717446 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttg |
36717347 |
T |
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| Q |
124 |
aaacaaaagcagtgatgatgatggcttctttctcgcagatacttcatcccttctcatcgtaata |
187 |
Q |
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||||| | |||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
36717346 |
aaaca------------acgatggcttctttcttgcagatatttcatcccttctcatcataata |
36717295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 24620546 - 24620630
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
24620546 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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