View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_172 (Length: 318)

Name: NF1345_low_172
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_172
NF1345_low_172
[»] chr8 (20 HSPs)
chr8 (30-301)||(15165875-15166146)
chr8 (30-301)||(15080102-15080373)
chr8 (33-187)||(24589893-24590047)
chr8 (112-188)||(18160485-18160561)
chr8 (30-147)||(12563726-12563843)
chr8 (49-97)||(248446-248494)
chr8 (49-97)||(811547-811595)
chr8 (49-97)||(3352822-3352870)
chr8 (49-97)||(6157704-6157752)
chr8 (49-97)||(9347736-9347784)
chr8 (49-97)||(13692757-13692805)
chr8 (49-97)||(17292805-17292853)
chr8 (49-97)||(21294908-21294956)
chr8 (49-97)||(22150933-22150981)
chr8 (112-188)||(22465441-22465517)
chr8 (49-97)||(23801326-23801374)
chr8 (49-97)||(29083029-29083077)
chr8 (49-97)||(36084559-36084607)
chr8 (49-97)||(36299564-36299612)
chr8 (49-97)||(44487752-44487800)
[»] chr1 (11 HSPs)
chr1 (33-144)||(34523153-34523264)
chr1 (58-185)||(9331117-9331244)
chr1 (49-97)||(3178180-3178228)
chr1 (49-97)||(5839783-5839831)
chr1 (49-97)||(7513853-7513901)
chr1 (49-97)||(19163867-19163915)
chr1 (49-97)||(21870242-21870290)
chr1 (49-97)||(22651287-22651335)
chr1 (49-97)||(35642235-35642283)
chr1 (49-97)||(38101664-38101712)
chr1 (49-97)||(47612130-47612178)
[»] chr5 (29 HSPs)
chr5 (30-182)||(18008806-18008958)
chr5 (49-97)||(9340230-9340278)
chr5 (49-97)||(14034317-14034365)
chr5 (49-97)||(14453550-14453598)
chr5 (49-97)||(14564591-14564639)
chr5 (49-97)||(15999834-15999882)
chr5 (49-97)||(17611337-17611385)
chr5 (49-97)||(17723193-17723241)
chr5 (49-97)||(21670127-21670175)
chr5 (49-97)||(22150791-22150839)
chr5 (49-97)||(22680391-22680439)
chr5 (49-97)||(23300552-23300600)
chr5 (49-97)||(23366211-23366259)
chr5 (49-97)||(23701055-23701103)
chr5 (49-97)||(24571347-24571395)
chr5 (49-97)||(24812188-24812236)
chr5 (49-97)||(24823414-24823462)
chr5 (49-97)||(27048775-27048823)
chr5 (49-97)||(27464437-27464485)
chr5 (49-97)||(30233964-30234012)
chr5 (49-97)||(31352809-31352857)
chr5 (49-97)||(31837755-31837803)
chr5 (49-97)||(34056208-34056256)
chr5 (49-97)||(35219778-35219826)
chr5 (49-97)||(36589055-36589103)
chr5 (49-97)||(36691973-36692021)
chr5 (49-97)||(37736505-37736553)
chr5 (49-97)||(39497425-39497473)
chr5 (49-97)||(42047055-42047103)
[»] chr4 (17 HSPs)
chr4 (73-186)||(11534940-11535053)
chr4 (73-186)||(11452432-11452546)
chr4 (49-97)||(4991951-4991999)
chr4 (49-97)||(5018788-5018836)
chr4 (49-97)||(10297322-10297370)
chr4 (49-97)||(10744754-10744802)
chr4 (49-97)||(10958523-10958571)
chr4 (49-97)||(16262516-16262564)
chr4 (49-97)||(18756646-18756694)
chr4 (49-97)||(22003068-22003116)
chr4 (49-97)||(24646982-24647030)
chr4 (49-97)||(27663263-27663311)
chr4 (49-97)||(30930649-30930697)
chr4 (49-97)||(36024942-36024990)
chr4 (49-97)||(43250111-43250159)
chr4 (49-97)||(49514187-49514235)
chr4 (49-97)||(55749408-55749456)
[»] scaffold0758 (1 HSPs)
scaffold0758 (112-186)||(1013-1087)
[»] chr7 (20 HSPs)
chr7 (32-136)||(24830782-24830885)
chr7 (49-150)||(13662990-13663091)
chr7 (30-102)||(5301304-5301376)
chr7 (112-188)||(16157448-16157524)
chr7 (49-97)||(461222-461270)
chr7 (49-97)||(1994175-1994223)
chr7 (49-97)||(2709849-2709897)
chr7 (49-97)||(4218627-4218675)
chr7 (49-97)||(8006302-8006350)
chr7 (49-97)||(8623964-8624012)
chr7 (49-97)||(10653208-10653256)
chr7 (49-97)||(11011806-11011854)
chr7 (49-97)||(17954350-17954398)
chr7 (49-97)||(20985876-20985924)
chr7 (49-97)||(22095760-22095808)
chr7 (49-97)||(24740720-24740768)
chr7 (49-97)||(26394330-26394378)
chr7 (49-97)||(26657571-26657619)
chr7 (49-97)||(40046340-40046388)
chr7 (49-97)||(42872467-42872515)
[»] chr3 (27 HSPs)
chr3 (56-188)||(18702750-18702882)
chr3 (49-97)||(13376819-13376867)
chr3 (49-97)||(13387413-13387461)
chr3 (49-97)||(508322-508370)
chr3 (49-97)||(1060181-1060229)
chr3 (49-97)||(4750356-4750404)
chr3 (49-97)||(5541173-5541221)
chr3 (49-97)||(5583785-5583833)
chr3 (49-97)||(5869848-5869896)
chr3 (49-97)||(6494496-6494544)
chr3 (49-97)||(8781300-8781348)
chr3 (49-97)||(10630975-10631023)
chr3 (49-97)||(11276537-11276585)
chr3 (49-97)||(13128310-13128358)
chr3 (49-97)||(13145771-13145819)
chr3 (49-97)||(15655193-15655241)
chr3 (49-97)||(15839859-15839907)
chr3 (49-97)||(16395199-16395247)
chr3 (49-97)||(19785059-19785107)
chr3 (49-97)||(20677349-20677397)
chr3 (49-97)||(23763931-23763979)
chr3 (49-97)||(24387670-24387718)
chr3 (49-97)||(24666507-24666555)
chr3 (49-97)||(28318390-28318438)
chr3 (49-97)||(38201289-38201337)
chr3 (49-97)||(39378721-39378769)
chr3 (49-97)||(41690286-41690334)
[»] scaffold0273 (1 HSPs)
scaffold0273 (49-147)||(21663-21761)
[»] scaffold0004 (3 HSPs)
scaffold0004 (43-188)||(4613-4758)
scaffold0004 (43-188)||(5998-6143)
scaffold0004 (43-188)||(11770-11915)
[»] scaffold0193 (1 HSPs)
scaffold0193 (43-188)||(11330-11475)
[»] scaffold0863 (1 HSPs)
scaffold0863 (112-188)||(1718-1794)
[»] scaffold0682 (1 HSPs)
scaffold0682 (49-97)||(6225-6273)
[»] scaffold0664 (1 HSPs)
scaffold0664 (49-97)||(1719-1767)
[»] scaffold0453 (1 HSPs)
scaffold0453 (112-188)||(4273-4349)
[»] scaffold0382 (1 HSPs)
scaffold0382 (49-97)||(5478-5526)
[»] scaffold0185 (1 HSPs)
scaffold0185 (49-97)||(22391-22439)
[»] scaffold0133 (1 HSPs)
scaffold0133 (49-97)||(37753-37801)
[»] scaffold0105 (1 HSPs)
scaffold0105 (49-97)||(41147-41195)
[»] chr6 (15 HSPs)
chr6 (49-97)||(3668035-3668083)
chr6 (49-97)||(4637517-4637565)
chr6 (49-97)||(12720998-12721046)
chr6 (49-97)||(12861522-12861570)
chr6 (49-97)||(13919837-13919885)
chr6 (49-97)||(18828472-18828520)
chr6 (112-188)||(19956141-19956217)
chr6 (49-97)||(26032011-26032059)
chr6 (49-97)||(26040207-26040255)
chr6 (49-97)||(26871393-26871441)
chr6 (49-97)||(27348336-27348384)
chr6 (49-97)||(27409076-27409124)
chr6 (49-97)||(27500295-27500343)
chr6 (49-97)||(32305208-32305256)
chr6 (49-97)||(32966108-32966156)
[»] chr2 (15 HSPs)
chr2 (49-97)||(4216488-4216536)
chr2 (49-97)||(9766935-9766983)
chr2 (49-97)||(9901745-9901793)
chr2 (49-97)||(10273579-10273627)
chr2 (49-97)||(11399344-11399392)
chr2 (49-97)||(19306591-19306639)
chr2 (49-97)||(22745598-22745646)
chr2 (49-97)||(22937829-22937877)
chr2 (49-97)||(24805822-24805870)
chr2 (49-97)||(27228031-27228079)
chr2 (49-97)||(35259597-35259645)
chr2 (49-97)||(35270222-35270270)
chr2 (49-97)||(39174266-39174314)
chr2 (49-97)||(40247201-40247249)
chr2 (49-97)||(43351995-43352043)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 15166146 - 15165875
Alignment:
Q  30 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  15166146 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatataaagtgtataattttaaaactaacatggttgaagaatcaatacac 15166047  T
Q  130 atcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgcccagatttaaatcactgaagatgctttagaatttgaacaag 229  Q
    |||||||||||||||||||| | | |||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  15166046 atcaaatttgatgacaaaaaacctaaaaataaaatatcagagctagttgaaaattttgccgagatttagatcactgaagatgctttagaatctgaacaag 15165947  T
Q  230 cttcagaatttattggtgcatctaatggttcagaagctagtgcaacgtctgaagcacccctagaaaaacatt 301  Q
    ||| ||||||||||||||| | | |||||||||||||||||||||  |||||||||| | ||||| ||||||    
T  15165946 ctttagaatttattggtgcttatgatggttcagaagctagtgcaaactctgaagcacacatagaagaacatt 15165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 15080102 - 15080373
Alignment:
Q  30 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  15080102 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactaacatgattgaagaattaatacac 15080201  T
Q  130 atcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgcccagatttaaatcactgaagatgctttagaatttgaacaag 229  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  15080202 atcaaatttgatgacaaaaaacctaaaaataaaatgtcagagctagttgaaaattttgccgagatttagatcactgaagatgctttagaatctgaacaag 15080301  T
Q  230 cttcagaatttattggtgcatctaatggttcagaagctagtgcaacgtctgaagcacccctagaaaaacatt 301  Q
    ||| ||||||||||||||| |   |||||||||||||||||||||  |||||||||| | ||||| ||||||    
T  15080302 ctttagaatttattggtgcttaagatggttcagaagctagtgcaaactctgaagcacacatagaagaacatt 15080373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 24590047 - 24589893
Alignment:
Q  33 caaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatc 132  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| | |||| ||  |||||||||| |||| || |     
T  24590047 caaagctcataagggtatcttcttaggatactctgaacgcttaaagacatacaaagtgtataattttgagactaacacagttgaagaattaatagacgta 24589948  T
Q  133 aaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttg 187  Q
    ||||||||||| ||| ||| ||| |||||||||||| |||||||||| |||||||    
T  24589947 aaatttgatgaaaaagagcatgacaataaaatgtcaaagctagttgacagttttg 24589893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 18160561 - 18160485
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||| ||||||||||||||||||||||||  ||| ||| |||||  |||||||||||||||||||||    
T  18160561 gttgaagaatcaatgcacatcaaatttgatgacaaaaagtctgacaatgaaatgctagagctagttgaaagttttgc 18160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 12563726 - 12563843
Alignment:
Q  30 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacac 129  Q
    |||||||||||| ||| | ||||| || | ||||| ||||||||| | |||||| | || |||||||||||||| ||  |  |||||||||  |||||||    
T  12563726 tgtcaaagctcaaaagtgcatcttattggaatactttgaacgctctatggcatacatagcgtataattttaaaattaatacagttgaagaactaatacac 12563825  T
Q  130 atcaaatttgatgacaaa 147  Q
    ||||||||||||||||||    
T  12563826 atcaaatttgatgacaaa 12563843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 248494 - 248446
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  248494 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 248446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 811595 - 811547
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  811595 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 811547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 3352822 - 3352870
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  3352822 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 3352870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 6157752 - 6157704
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  6157752 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 6157704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 9347784 - 9347736
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  9347784 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 9347736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 13692757 - 13692805
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  13692757 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 13692805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17292805 - 17292853
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  17292805 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 17292853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 21294956 - 21294908
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  21294956 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 21294908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 22150933 - 22150981
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22150933 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22150981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 22465441 - 22465517
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||| ||| | ||||||||||| ||| ||| || |||| |||  ||||||| || ||||||||||||    
T  22465441 gttgaagaatcaatgcacgttaaatttgatgaaaaagagcctggaaatgaaacttcagagcaaggtgaaagttttgc 22465517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23801374 - 23801326
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  23801374 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 23801326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 29083077 - 29083029
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  29083077 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 29083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 36084607 - 36084559
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  36084607 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 36084559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 36299612 - 36299564
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  36299612 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 36299564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 44487800 - 44487752
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  44487800 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 44487752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 34523153 - 34523264
Alignment:
Q  33 caaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatc 132  Q
    |||| |||||||||||||| |||||||||||| ||||| |||||||| ||| ||||||||||||||| |||||| ||| ||| |||||| ||||||||||    
T  34523153 caaatctcataagggtatcatcttaggatactttgaacactcaaaggtatacagagtgtataattttgaaactaacattgttaaagaattaatacacatc 34523252  T
Q  133 aaatttgatgac 144  Q
    ||||| ||||||    
T  34523253 aaattggatgac 34523264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 9331117 - 9331244
Alignment:
Q  58 ggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaa 157  Q
    |||||||| ||| | ||||||||||| | ||||||||||| | ||||||  || ||  |||||||||||||||  ||||||||||| ||| ||| | | |    
T  9331117 ggatactcagaatgatcaaaggcatacaaagtgtataattctcaaactaatatagtgaaagaatcaatacacaataaatttgatgataaagagcctaaca 9331216  T
Q  158 ataaaatgtcagagctagttgaaagttt 185  Q
    |  ||||||| |||||||| || |||||    
T  9331217 aacaaatgtcggagctagtggatagttt 9331244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 3178228 - 3178180
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  3178228 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 3178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 5839831 - 5839783
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5839831 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5839783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 7513901 - 7513853
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  7513901 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 7513853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 19163867 - 19163915
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  19163867 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 19163915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 21870290 - 21870242
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  21870290 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 21870242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22651335 - 22651287
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22651335 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22651287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 35642235 - 35642283
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  35642235 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 35642283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 38101712 - 38101664
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  38101712 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 38101664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 47612130 - 47612178
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  47612130 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 47612178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 18008958 - 18008806
Alignment:
Q  30 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacac 129  Q
    |||||||||| | || || ||||| |||||||| |  || |||||||| |||| || ||||||||||| ||||||||  |   |||||||||||||||||    
T  18008958 tgtcaaagcttagaatggaatctttttaggatatttcgagcgctcaaaagcatgtatagtgtataattctaaaactaatacaattgaagaatcaatacac 18008859  T
Q  130 atcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaag 182  Q
    ||||| ||||||||| |||||  ||| ||||||||||||||||||||||||||    
T  18008858 atcaattttgatgaccaaaagtctgataataaaatgtcagagctagttgaaag 18008806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9340230 - 9340278
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  9340230 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 9340278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 14034317 - 14034365
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  14034317 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 14034365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 14453598 - 14453550
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  14453598 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 14453550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 14564639 - 14564591
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  14564639 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 14564591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 15999882 - 15999834
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  15999882 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 15999834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17611337 - 17611385
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  17611337 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 17611385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17723193 - 17723241
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  17723193 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 17723241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 21670127 - 21670175
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  21670127 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 21670175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 22150791 - 22150839
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22150791 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22150839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 22680391 - 22680439
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22680391 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22680439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23300552 - 23300600
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  23300552 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 23300600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23366211 - 23366259
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  23366211 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 23366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23701055 - 23701103
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  23701055 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 23701103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24571347 - 24571395
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24571347 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24812188 - 24812236
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24812188 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 24823462 - 24823414
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24823462 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24823414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27048823 - 27048775
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27048823 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27048775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 27464437 - 27464485
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27464437 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 30234012 - 30233964
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  30234012 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 30233964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 31352809 - 31352857
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  31352809 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 31352857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 31837755 - 31837803
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  31837755 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 31837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 34056208 - 34056256
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||||||||||||| | |||||||| || |||||||||||||    
T  34056208 atctttttaggatactctgaaaggtcaaaggcgtacagagtgtataatt 34056256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 35219778 - 35219826
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  35219778 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 35219826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 36589103 - 36589055
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  36589103 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 36589055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 36691973 - 36692021
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  36691973 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 36692021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 37736553 - 37736505
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  37736553 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 37736505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 39497473 - 39497425
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  39497473 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 39497425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 42047055 - 42047103
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  42047055 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 42047103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 11535053 - 11534940
Alignment:
Q  73 tcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagc 172  Q
    |||||| |||| | ||||||||||||| |||||| | | || ||| ||| ||| |||||||||||| |||||||| ||| ||| |||||||| ||| |||    
T  11535053 tcaaagacatacaaagtgtataattttgaaactaacttagtggaataattaatgcacatcaaatttaatgacaaagagcatgacaataaaatttcaaagc 11534954  T
Q  173 tagttgaaagtttt 186  Q
    ||||||||||||||    
T  11534953 tagttgaaagtttt 11534940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 11452432 - 11452546
Alignment:
Q  73 tcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagc 172  Q
    |||||| |||| | ||||||||||||| |||||| | | || ||| ||||||| |||||||||||| |||||||| ||| ||| |||||||| ||| |||    
T  11452432 tcaaagacatacaaagtgtataattttgaaactaacttagtggaataatcaatgcacatcaaatttaatgacaaagagcatgacaataaaatttcaaagc 11452531  T
Q  173 tagtt-gaaagtttt 186  Q
    ||||| |||||||||    
T  11452532 tagttagaaagtttt 11452546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 4991951 - 4991999
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  4991951 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 4991999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 5018836 - 5018788
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5018836 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5018788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 10297370 - 10297322
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10297370 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10297322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 10744754 - 10744802
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10744754 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10744802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 10958523 - 10958571
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10958523 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10958571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 16262564 - 16262516
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  16262564 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 16262516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 18756646 - 18756694
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  18756646 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 18756694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22003116 - 22003068
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22003116 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22003068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 24647030 - 24646982
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24647030 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24646982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27663311 - 27663263
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27663311 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27663263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 30930649 - 30930697
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  30930649 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 30930697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 36024990 - 36024942
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  36024990 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 36024942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 43250159 - 43250111
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  43250159 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 43250111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 49514235 - 49514187
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  49514235 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 49514187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 55749408 - 55749456
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  55749408 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 55749456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 1087 - 1013
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagtttt 186  Q
    |||||||||||||| |||||||||||||||||||| |||| |  || ||||||  ||||||||||||||||||||    
T  1087 gttgaagaatcaattcacatcaaatttgatgacaagaagcctagaagtaaaattccagagctagttgaaagtttt 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 24830885 - 24830782
Alignment:
Q  32 tcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacat 131  Q
    |||||||||||||  ||||||| |||||||||||| || ||||||||| ||| ||||| ||||||| ||||||||  |   ||||||||| |||||||||    
T  24830885 tcaaagctcataaatgtatctttttaggatactctaaatgctcaaaggtatacagagtatataattataaaactaatacaattgaagaat-aatacacat 24830787  T
Q  132 caaat 136  Q
    |||||    
T  24830786 caaat 24830782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 13663091 - 13662990
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatgacaaaa 148  Q
    ||||| ||||| ||||||||| | ||||||||||| ||||||||||||||  | ||  ||   |||||||||||||| ||| | ||||||||||||||||    
T  13663091 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatttagagacactctgtgttgaagaatcaatgcacgttaaatttgatgacaaaa 13662992  T
Q  149 ag 150  Q
    ||    
T  13662991 ag 13662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 5301304 - 5301376
Alignment:
Q  30 tgtcaaagctcataagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaa 102  Q
    |||||||||||| || ||||| || |||||||||| |||| ||||||||  ||| | ||||||||||||||||    
T  5301304 tgtcaaagctcagaacggtattttattaggatactttgaatgctcaaagatatacaaagtgtataattttaaa 5301376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 16157448 - 16157524
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||| || |||||||||| ||||||  |||||| || | ||||  ||||||||||||||| ||||||    
T  16157448 gttgaagaatcaatgcatatcaaatttggtgacaaggagcttggaagtgaaattccagagctagttgaaatttttgc 16157524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 461222 - 461270
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  461222 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 461270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 1994223 - 1994175
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  1994223 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 1994175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 2709849 - 2709897
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  2709849 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 2709897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 4218675 - 4218627
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  4218675 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 4218627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 8006302 - 8006350
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  8006302 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 8006350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 8624012 - 8623964
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  8624012 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 8623964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 10653256 - 10653208
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10653256 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10653208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 11011854 - 11011806
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  11011854 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 11011806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17954350 - 17954398
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  17954350 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 17954398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 20985924 - 20985876
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | |||||||| ||||||||||||||||    
T  20985924 atctttttaggttactctgaaaggtcaaaggcgtatagagtgtataatt 20985876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22095808 - 22095760
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22095808 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22095760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 24740768 - 24740720
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24740768 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24740720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 26394330 - 26394378
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  26394330 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 26394378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 26657571 - 26657619
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  26657571 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 26657619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 40046340 - 40046388
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  40046340 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 40046388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 42872515 - 42872467
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  42872515 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 42872467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 18702750 - 18702882
Alignment:
Q  56 taggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatg-gttgaagaatcaatacacatcaaatttgatgacaaaaagcttg 154  Q
    |||| ||||||||| | ||||||||||| | |||||||||||   |||| |  ||| |||||||||||||| ||||||||||||||||||||| ||| ||    
T  18702750 taggttactctgaaaggtcaaaggcatacaaagtgtataattcagaaac-acaatgtgttgaagaatcaatgcacatcaaatttgatgacaaagagcctg 18702848  T
Q  155 aaaataaaatgtcagagctagttgaaagttttgc 188  Q
     || | ||||  | ||||||||| ||||||||||    
T  18702849 gaagtgaaattacggagctagttcaaagttttgc 18702882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 13376819 - 13376867
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | |||||||||||||||||||||||||    
T  13376819 atctttttaggttactctgaaaggtcaaaggcatatagagtgtataatt 13376867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 13387413 - 13387461
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | |||||||||||||||||||||||||    
T  13387413 atctttttaggttactctgaaaggtcaaaggcatatagagtgtataatt 13387461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 508322 - 508370
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  508322 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 508370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 1060229 - 1060181
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  1060229 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 1060181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 4750404 - 4750356
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  4750404 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 4750356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 5541173 - 5541221
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5541173 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5541221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 5583785 - 5583833
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5583785 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5583833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 5869848 - 5869896
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5869848 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5869896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 6494496 - 6494544
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  6494496 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 6494544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 8781348 - 8781300
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  8781348 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 8781300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 10630975 - 10631023
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10630975 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10631023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 11276537 - 11276585
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  11276537 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 11276585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 13128358 - 13128310
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  13128358 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 13128310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 13145819 - 13145771
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  13145819 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 13145771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 15655193 - 15655241
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  15655193 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 15655241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 15839907 - 15839859
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  15839907 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 15839859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 16395199 - 16395247
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  16395199 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 16395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 19785107 - 19785059
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | |||||||| ||||||||||||||||    
T  19785107 atctttttaggttactctgaaaggtcaaaggcgtatagagtgtataatt 19785059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 20677349 - 20677397
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  20677349 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 20677397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23763979 - 23763931
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  23763979 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 23763931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24387670 - 24387718
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24387670 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24387718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 24666555 - 24666507
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24666555 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 28318390 - 28318438
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  28318390 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 28318438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 38201337 - 38201289
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  38201337 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 38201289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 39378769 - 39378721
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  39378769 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 39378721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 41690334 - 41690286
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  41690334 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 41690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 21761 - 21663
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatg-gttgaagaatcaatacacatcaaatttgatgacaaa 147  Q
    ||||| ||||| |||||| || | ||||||||||| |||||||| ||||  |||||  | ||| |||||||||||||| |||||||||||||||||||||    
T  21761 atctttttaggttactctaaaaggtcaaaggcatacagagtgtacaattcaaaaacact-atgtgttgaagaatcaatgcacatcaaatttgatgacaaa 21663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 4758 - 4613
Alignment:
Q  43 aagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatg 142  Q
    ||||| ||||||||||| ||||||||| | ||||||||||| | |||||||||||   | ||  ||   |||||||||||||| ||| | ||||||||||    
T  4758 aaggggatcttcttaggttactctgaaaggtcaaaggcatacaaagtgtataattcagagacactctgtgttgaagaatcaatgcacgttaaatttgatg 4659  T
Q  143 acaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    ||||| ||| || || | |||   |||||| || ||||||||||||    
T  4658 acaaagagcctggaagtgaaactccagagcaagatgaaagttttgc 4613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 5998 - 6143
Alignment:
Q  43 aagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatg 142  Q
    ||||| ||||||||||| ||||||||| | ||||||||||| | |||||||||||   | ||  ||   |||||||||||||| ||| | ||||||||||    
T  5998 aaggggatcttcttaggttactctgaaaggtcaaaggcatacaaagtgtataattcagagacactctgtgttgaagaatcaatgcacgttaaatttgatg 6097  T
Q  143 acaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    ||||| ||| || || | |||   |||||| || ||||||||||||    
T  6098 acaaagagcctggaagtgaaactccagagcaagatgaaagttttgc 6143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 11915 - 11770
Alignment:
Q  43 aagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatg 142  Q
    ||||| ||||||||||| ||||||||| | ||||||||||| | |||||||||||   | ||  ||   |||||||||||||| ||| | ||||||||||    
T  11915 aaggggatcttcttaggttactctgaaaggtcaaaggcatacaaagtgtataattcagagacactctgtgttgaagaatcaatgcacgttaaatttgatg 11816  T
Q  143 acaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    ||||| ||| || || | |||   |||||| || ||||||||||||    
T  11815 acaaagagcctggaagtgaaactccagagcaagatgaaagttttgc 11770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 11475 - 11330
Alignment:
Q  43 aagggtatcttcttaggatactctgaacgctcaaaggcatatagagtgtataattttaaaactatcatggttgaagaatcaatacacatcaaatttgatg 142  Q
    ||||| ||||| ||||| ||||||||| | |||||| |||| | ||||||||||||  | ||  |    |||||||||||||| ||| | ||||||||||    
T  11475 aagggaatctttttaggttactctgaaaggtcaaagacatacaaagtgtataatttagagacactttgtgttgaagaatcaatgcacgttaaatttgatg 11376  T
Q  143 acaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    ||||| ||| |  |||| |||  ||||||| || ||||||||||||    
T  11375 acaaagagcctagaaatgaaacttcagagcaagatgaaagttttgc 11330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 1718 - 1794
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||  || || ||||||||||||||| ||| || ||||||||   |||||| || ||||||||||||    
T  1718 gttgaagaatcaacgcagattaaatttgatgacaaagagcctggaaataaaactccagagcaagatgaaagttttgc 1794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0682 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0682
Description:

Target: scaffold0682; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 6225 - 6273
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  6225 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 6273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 1767 - 1719
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  1767 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 1719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 4349 - 4273
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||| ||||| ||||||||||||||| ||  || || | |||  ||||||| || ||||||||||||    
T  4349 gttgaagaatcaatgcacattaaatttgatgacaaagagtctggaagtgaaacttcagagcaagatgaaagttttgc 4273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 5478 - 5526
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5478 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 5526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22439 - 22391
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22439 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 37801 - 37753
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  37801 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 37753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 41147 - 41195
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  41147 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 41195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 3668083 - 3668035
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  3668083 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 3668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 4637565 - 4637517
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  4637565 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 4637517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 12720998 - 12721046
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  12720998 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 12721046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 12861570 - 12861522
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  12861570 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 12861522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 13919885 - 13919837
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  13919885 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 13919837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 18828472 - 18828520
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  18828472 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 18828520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 19956141 - 19956217
Alignment:
Q  112 gttgaagaatcaatacacatcaaatttgatgacaaaaagcttgaaaataaaatgtcagagctagttgaaagttttgc 188  Q
    |||||||||||||| ||||| ||||||||||||||| ||| || || | |||   |||||| || ||||||||||||    
T  19956141 gttgaagaatcaatgcacataaaatttgatgacaaagagcctggaagtgaaactccagagcaagatgaaagttttgc 19956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 26032059 - 26032011
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  26032059 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 26032011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 26040255 - 26040207
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  26040255 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 26040207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 26871441 - 26871393
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  26871441 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 26871393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27348384 - 27348336
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27348384 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27409124 - 27409076
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27409124 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27409076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27500343 - 27500295
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27500343 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 32305208 - 32305256
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  32305208 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 32305256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 32966108 - 32966156
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  32966108 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 32966156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 4216536 - 4216488
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  4216536 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 4216488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9766935 - 9766983
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  9766935 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 9766983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9901745 - 9901793
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  9901745 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 9901793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 10273627 - 10273579
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  10273627 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 10273579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 11399344 - 11399392
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  11399344 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 11399392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 19306591 - 19306639
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  19306591 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 19306639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 22745598 - 22745646
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22745598 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22745646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 22937829 - 22937877
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  22937829 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 22937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24805822 - 24805870
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  24805822 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 24805870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27228079 - 27228031
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  27228079 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 27228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 35259645 - 35259597
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  35259645 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 35259597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 35270270 - 35270222
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  35270270 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 35270222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 39174266 - 39174314
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  39174266 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 39174314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 40247249 - 40247201
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  40247249 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 40247201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 43352043 - 43351995
Alignment:
Q  49 atcttcttaggatactctgaacgctcaaaggcatatagagtgtataatt 97  Q
    ||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  43352043 atctttttaggttactctgaaaggtcaaaggcatacagagtgtataatt 43351995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University