View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_173 (Length: 317)
Name: NF1345_low_173
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_173 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 7502060 - 7502192
Alignment:
| Q |
93 |
tcagaactgcatgaagaaaccaagaaaaagggaactctttagtttaccaannnnnnn-ccatgacactagacgtcactttccccgcccggtgcttgcttc |
191 |
Q |
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| T |
7502060 |
tcagaactgcatgaagaaaccaagaaaaagggaactctttagtttaccaattttttttccatgacactagacgtcactttccccgcctggtgcttgcttc |
7502159 |
T |
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| Q |
192 |
tgcacttgttcttccgacgaccactgctataac |
224 |
Q |
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| T |
7502160 |
tgcacttgttcttccgacgaccactgctataac |
7502192 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7501969 - 7502024
Alignment:
| Q |
1 |
cctgaggcttggtctaccccttaaaagaatgacctttatcatactaacatgaagct |
56 |
Q |
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| T |
7501969 |
cctgaggcttggtctgccccttaaaagaatgacctttaacatactaacatgaagct |
7502024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 8139653 - 8139599
Alignment:
| Q |
150 |
ccatgacactagacgtcactttccccgcccggtgcttgcttctgcacttgttctt |
204 |
Q |
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| T |
8139653 |
ccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttctt |
8139599 |
T |
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