View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_176 (Length: 311)
Name: NF1345_low_176
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_176 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 47125272 - 47124999
Alignment:
| Q |
18 |
caacttaacaacttcattttcaattgaagatcactgtgttgtttgaacctctcatgcatgtcttacatattttagcggtagctaaggaatatattacact |
117 |
Q |
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| T |
47125272 |
caacttaacaacttcattttcaattgaagatcact-------ttgaacctctcatacatgtcttacatattttagcggtagctaaggaatatattacact |
47125180 |
T |
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| Q |
118 |
tgaaaactttccctacgaggggttgagaaacaagaaaatcccatgacaatgaatataggtaaaaattatggcattgatctttaaagatctttaaagcaaa |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125179 |
tgaaaactttccctacgaggggttgagaaacgagaaaatcccatgacaatgaatataggtaaaaattatggcattgatctttaaagatctttaaagcaaa |
47125080 |
T |
|
| Q |
218 |
tgtgctnnnnnnnnnnnnnnnnnnnnnnntcattaaggaagaccacattgaacaagagttcacttttttaggctcacacct |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125079 |
tgtgctaaaagaagtaaagaaaaaataaatcattaaggaagaccacattgaacaagagttcacttttttaggctcacacct |
47124999 |
T |
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