View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_178 (Length: 306)
Name: NF1345_low_178
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_178 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 70 - 297
Target Start/End: Complemental strand, 19058636 - 19058409
Alignment:
| Q |
70 |
aatcatttctgtacttttcacttcacaagtctatgccatcactttttcttgatatattatattatcattttcatataaaatatgaagagtctatttactc |
169 |
Q |
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| T |
19058636 |
aatcatttctgcacttttcacttcacaagtctatgccatcactttttctatatatattatattatcattttcatataaaatatgaagagtctatttaccc |
19058537 |
T |
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| Q |
170 |
ttttaatgtttgtcacaacttcacaatgcttgtgtggtagaataacacctgacgatggttctaactttaatgttcttacatatggtgccaacggggatgg |
269 |
Q |
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| T |
19058536 |
ttttaatgtttgtcataacttcacaatgcttgtgtggtagaataacacctgacgatggttctaactttaatgttcttacatatggtgccaacggggatgg |
19058437 |
T |
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| Q |
270 |
caatgctgatgattcaaatgtatatatt |
297 |
Q |
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| T |
19058436 |
caatactgatgattcaaatgtatatatt |
19058409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 38095260 - 38095326
Alignment:
| Q |
226 |
ggttctaactttaatgttcttacatatggtgccaacggggatggcaatgctgatgattcaaatgtat |
292 |
Q |
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| T |
38095260 |
ggttctacctttgatgttcttacatatggtgccatcggggatggtcaaaccgatgattcaaatgtat |
38095326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 21549656 - 21549725
Alignment:
| Q |
228 |
ttctaactttaatgttcttacatatggtgccaacggggatggcaatgctgatgattcaaatgtatatatt |
297 |
Q |
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| T |
21549656 |
ttctacctttgatgttcttacatatggtgccattggggatggtcaaactgatgattcaaatgtaaatatt |
21549725 |
T |
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