View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_179 (Length: 305)

Name: NF1345_low_179
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_179
NF1345_low_179
[»] chr4 (7 HSPs)
chr4 (30-253)||(55312523-55312742)
chr4 (200-253)||(27759321-27759374)
chr4 (200-253)||(33164025-33164078)
chr4 (200-253)||(46817007-46817060)
chr4 (207-253)||(31825100-31825146)
chr4 (200-236)||(1225850-1225886)
chr4 (125-174)||(28796645-28796694)
[»] chr3 (9 HSPs)
chr3 (200-253)||(42381958-42382011)
chr3 (200-253)||(42382738-42382791)
chr3 (200-253)||(44835966-44836019)
chr3 (200-253)||(47065374-47065427)
chr3 (200-253)||(48088036-48088089)
chr3 (202-253)||(39417434-39417485)
chr3 (200-251)||(42950499-42950550)
chr3 (200-253)||(25577069-25577122)
chr3 (200-248)||(53827175-53827223)
[»] chr8 (3 HSPs)
chr8 (200-253)||(28706620-28706673)
chr8 (200-253)||(33800016-33800069)
chr8 (200-252)||(43640497-43640549)
[»] chr7 (8 HSPs)
chr7 (200-253)||(20379165-20379218)
chr7 (200-253)||(18237238-18237291)
chr7 (200-253)||(30360192-30360245)
chr7 (200-253)||(40592408-40592461)
chr7 (200-253)||(41217284-41217337)
chr7 (200-253)||(48221221-48221274)
chr7 (204-253)||(47268585-47268634)
chr7 (202-253)||(26603686-26603737)
[»] chr6 (2 HSPs)
chr6 (200-253)||(800843-800896)
chr6 (200-231)||(35060447-35060478)
[»] chr5 (3 HSPs)
chr5 (200-253)||(3458508-3458561)
chr5 (200-253)||(19400035-19400088)
chr5 (200-253)||(40009200-40009253)
[»] chr2 (6 HSPs)
chr2 (200-253)||(22492948-22493001)
chr2 (200-253)||(42119689-42119742)
chr2 (200-253)||(12968778-12968831)
chr2 (205-253)||(32734325-32734373)
chr2 (203-253)||(29906258-29906308)
chr2 (200-253)||(17796584-17796637)
[»] chr1 (11 HSPs)
chr1 (200-253)||(45688827-45688880)
chr1 (200-253)||(46182033-46182086)
chr1 (200-253)||(47488501-47488554)
chr1 (200-253)||(49599343-49599396)
chr1 (200-253)||(41875369-41875422)
chr1 (200-253)||(17696722-17696775)
chr1 (200-253)||(48568889-48568942)
chr1 (200-253)||(21485114-21485167)
chr1 (200-253)||(50068739-50068792)
chr1 (200-231)||(27035797-27035828)
chr1 (200-253)||(3658331-3658384)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 55312742 - 55312523
Alignment:
Q  30 agattgagattgatcaaccacactctctctcacccgcacacgttctaattattctcgactattcatttctcatcaaaccattcaagttaaacggaatcgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55312742 agattgagattgatcaaccacactctctctcacccgcacacgttctaattattctcgactattcatttctcatcaaaccattcaagttaaacggattcgc 55312643  T
Q  130 tcattctcagaataaatatccaaaatattcatgtgcatgttaacatgcatgcgctagtgtattttcttacctaaataattaagcaatattactcatttgc 229  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    | | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55312642 tcattctcataataaatgtccaaaatattcatgtgcatgttaa----cctacgctagtgtattttcttacctaaataattaagcaatattactcatttgc 55312547  T
Q  230 atataacattggatcatatcttgc 253  Q
    |  ||| |||||||||||||||||    
T  55312546 acgtaatattggatcatatcttgc 55312523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 27759374 - 27759321
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  27759374 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 27759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 33164025 - 33164078
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  33164025 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 33164078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 46817007 - 46817060
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  46817007 ctaaataagtaagcaatattactcatttgcatgtaacattgggtcatatcttgc 46817060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 31825100 - 31825146
Alignment:
Q  207 attaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  31825100 attaagcaatattactcatttgcatgtaacattgtatcgtatcttgc 31825146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 1225886 - 1225850
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataac 236  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1225886 ctaaataattaagcaatattactcatttgcatgtaac 1225850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 28796645 - 28796694
Alignment:
Q  125 atcgctcattctcagaataaatatccaaaatattcatgtgcatgttaaca 174  Q
    |||||||||||||| | ||||| |||||||| | ||||||||||||||||    
T  28796645 atcgctcattctcaaagtaaatgtccaaaatgtccatgtgcatgttaaca 28796694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 42382011 - 42381958
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42382011 ctaaataattaagcaatattactcatttgcatgtaacattggatcatatcttgc 42381958  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 42382791 - 42382738
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42382791 ctaaataattaagcaatattactcatttgcatgtaacattggatcatatcttgc 42382738  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 44835966 - 44836019
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  44835966 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 44836019  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 47065427 - 47065374
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  47065427 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 47065374  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 48088036 - 48088089
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  48088036 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 48088089  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 39417434 - 39417485
Alignment:
Q  202 aaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  39417434 aaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 39417485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 42950499 - 42950550
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatctt 251  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  42950499 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatctt 42950550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 25577069 - 25577122
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  25577069 ctaaataattaagcaatattactcatttgcatgtaacattgtattatatcttgc 25577122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 53827175 - 53827223
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatat 248  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  53827175 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatat 53827223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 28706620 - 28706673
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  28706620 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 28706673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 33800016 - 33800069
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  33800016 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 33800069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 43640497 - 43640549
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttg 252  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  43640497 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttg 43640549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 20379165 - 20379218
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  20379165 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 20379218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 18237291 - 18237238
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  18237291 ctaaataattaagcaatattactcatttgcatgtaacattgtattatatcttgc 18237238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 30360245 - 30360192
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  30360245 ctaaataattaagtaatattactcatttgcatgtaacattgtatcatatcttgc 30360192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 40592461 - 40592408
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  40592461 ctaaataattaagcaatattactcatttgcatgtaatattgtatcatatcttgc 40592408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 41217337 - 41217284
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  41217337 ctaaataattaagcaatattactcatttgcatgtaatattgtatcatatcttgc 41217284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 48221221 - 48221274
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  48221221 ctaaataattaagcaatattactcgtttgcatgtaacattgggtcatatcttgc 48221274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 47268634 - 47268585
Alignment:
Q  204 ataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  47268634 ataattaagcaatattactcatttgcatgtaatattgtatcatatcttgc 47268585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 26603686 - 26603737
Alignment:
Q  202 aaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  26603686 aaataattaagcaatattacttatttgcaggtaacattgtatcatatcttgc 26603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 800896 - 800843
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  800896 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 800843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 35060447 - 35060478
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcat 231  Q
    ||||||||||||||||||||||||||||||||    
T  35060447 ctaaataattaagcaatattactcatttgcat 35060478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 3458561 - 3458508
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  3458561 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 3458508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 19400088 - 19400035
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  19400088 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 19400035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 40009253 - 40009200
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  40009253 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 40009200  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 22493001 - 22492948
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  22493001 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 22492948  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 42119742 - 42119689
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  42119742 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 42119689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 12968778 - 12968831
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||| ||||||||||||||||||||||||||| || |||||| |||||||||||    
T  12968778 ctaagtaattaagcaatattactcatttgcatgtagcattgggtcatatcttgc 12968831  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 32734373 - 32734325
Alignment:
Q  205 taattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  32734373 taattaagcaatgttactcatttgcatgtaacattgtatcatatcttgc 32734325  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 29906308 - 29906258
Alignment:
Q  203 aataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||||||| |||||||||||||||||||  ||||||| ||||||||||||    
T  29906308 aataattaaccaatattactcatttgcatgcaacattgtatcatatcttgc 29906258  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 17796584 - 17796637
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||| ||||||||||||| | |||||||||| |||||||| ||||||||||||    
T  17796584 ctaaacaattaagcaatataagtcatttgcatgtaacattgtatcatatcttgc 17796637  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 45688880 - 45688827
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  45688880 ctaaataattaagcaatattactcatttgcatgtaacattggctcatatcttgc 45688827  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 46182033 - 46182086
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  46182033 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 46182086  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 47488501 - 47488554
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  47488501 ctaaataattaagcaatattactcatttgcatgtaacattgggtcatatcttgc 47488554  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 49599343 - 49599396
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  49599343 ctaaataattaagcaatattactcatttgcatgtaacattgtatcatatcttgc 49599396  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 41875369 - 41875422
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  41875369 ctaaataattaaccaatattactcatttgcatgtaacattgtatcatatcttgc 41875422  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 17696775 - 17696722
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||||| || || |||||||| ||||||||||||    
T  17696775 ctaaataattaagcaatattactcatctggatgtaacattgtatcatatcttgc 17696722  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 48568889 - 48568942
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    |||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||    
T  48568889 ctaaataattaagcaatattactcgtttgcatgtaatattgtatcatatcttgc 48568942  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 21485114 - 21485167
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||| ||||||||||||| | |||||||||| |||||||| ||||||||||||    
T  21485114 ctaaacaattaagcaatataagtcatttgcatgtaacattgtatcatatcttgc 21485167  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 50068739 - 50068792
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||| |||||||||||||||||||||||||| | ||||||  |||||||||||    
T  50068739 ctaaacaattaagcaatattactcatttgcatgttacattgagtcatatcttgc 50068792  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 27035797 - 27035828
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcat 231  Q
    ||||||||||||||||||||||||||||||||    
T  27035797 ctaaataattaagcaatattactcatttgcat 27035828  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 3658384 - 3658331
Alignment:
Q  200 ctaaataattaagcaatattactcatttgcatataacattggatcatatcttgc 253  Q
    ||||| ||||||||||||| | |||||||||| |||| ||| ||||||||||||    
T  3658384 ctaaacaattaagcaatataagtcatttgcatgtaacgttgtatcatatcttgc 3658331  T

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