View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_18 (Length: 623)
Name: NF1345_low_18
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 214 - 506
Target Start/End: Original strand, 34618581 - 34618871
Alignment:
| Q |
214 |
aaaaattaaagtcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaattaacaaccnnnnnnnnnctcacgccacctttg |
313 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
34618581 |
aaaaattaaagtcaaaatcagcaaattag-taagtacaataagaaaatgaattagtataattagaaattaacaaaaaaaaaaaaactcacaccaactttg |
34618679 |
T |
|
| Q |
314 |
tgtaatttgtacaaaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgtagaatccatatgctgaacaatcgaaacaaaaaata |
413 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
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|
| T |
34618680 |
tgcaatttgtacaaaatgagaaccaatcaaaatttttgtttcacaaatctatttgtagactgtgtagaatccatatgttgaacaatcgaaacaacaaata |
34618779 |
T |
|
| Q |
414 |
aaacataggaatctcaatatcaagtcaaattgttggctttttgacctctctgttggctttggataaatacatttagagagagggtgagggaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34618780 |
aaacataggaatctcaatatcaagtcaaattgttgg-tttttgacctctctgttgcctttggataaatacatttagagagagggtgagggaaa |
34618871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 34618096 - 34618222
Alignment:
| Q |
96 |
ttgtgacagccatgggagatcaggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataatacatt |
195 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
34618096 |
ttgtgatagccatgggagatcaagtgtgtatatatcaattaatagcagactccaatataacaaagacaaaattctagagatgatgaatacataatacatt |
34618195 |
T |
|
| Q |
196 |
gaaccctttgttcataagaaaaattaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
34618196 |
gaaccctttgttcataagaaaaattaa |
34618222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 27406376 - 27406555
Alignment:
| Q |
91 |
caatattgtgacagccatgggagatcaggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataat |
190 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||||||| || |||| ||||| || |||||||||||||||| |||||||||||||| |
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|
| T |
27406376 |
caatcttgtgacagccatgggaga---ggtgtttatatatcaattaataacatactcatatattcaaaagacaaaattctagagaggatgaatacataat |
27406472 |
T |
|
| Q |
191 |
acattgaaccctttgttcataagaaaaattaaagtcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataa |
273 |
Q |
| |
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|| ||||||||||| | | |||| |||||||||||||||| || ||| |||||||| || || ||||| ||||| |||||||| |
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|
| T |
27406473 |
accttgaaccctttatacttaagtaaaattaaagtcaaaaccaacaacttaggtaaataaaagaggaatatgaagtagtataa |
27406555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 117 - 565
Target Start/End: Complemental strand, 34709887 - 34709421
Alignment:
| Q |
117 |
aggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataatacattgaaccctttgttcataagaaa |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
34709887 |
aggtgtgtatatatcaattaataacagactcctacataataaagacaaaattctagagaggatgaatacataatacattaaaccctttgttcataagtaa |
34709788 |
T |
|
| Q |
217 |
aattaaag--------tcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaattaacaaccnnnnnnnnnctcacgccac |
308 |
Q |
| |
|
|||||||| | ||||||| ||| || |||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| |
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|
| T |
34709787 |
aattaaagtaaaaaactgaaaatcaacaacttgggtaagtaaaataggaatatgaattagtataattagaaattaaaaa----aaaaaaactcatgccga |
34709692 |
T |
|
| Q |
309 |
ctttgtgtaatttgtacaaaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgtagaatccatatgctgaacaatcgaaacaaa |
408 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | | ||||||||||| |||||||||| ||||||| |
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|
| T |
34709691 |
gtttgtgtaatttgtacaaagtgagaaccaatcaaaattgttgtttcacaaatctatccgtaaattatatagaatccatacgctgaacaattgaaacaac |
34709592 |
T |
|
| Q |
409 |
aaataaaacataggaatctcaatatcaagtcaaattgttggctttttgacctc------tctgttggctttggataaatacatttaga-------gagag |
495 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||| | ||||| |
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|
| T |
34709591 |
aaataaaacatacaaatctcaatatcaagtcaaactgttggc-ttttgacctctctttgtctgttggcgttggataaatacatttaaagagagaggagag |
34709493 |
T |
|
| Q |
496 |
ggtg-agggaaaaagtg-acttgagcttgcgtgagaaaagacagtatgggctaacatgtaaattatttaaaa |
565 |
Q |
| |
|
|||| ||||||||| || | ||||||||| ||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
34709492 |
ggtgaagggaaaaaatgaagttgagcttgtgtgagaaaagataggatgggctaacatgtaaattatttaaaa |
34709421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 180 - 587
Target Start/End: Original strand, 47667474 - 47667876
Alignment:
| Q |
180 |
gaatacataatacattgaaccctttgttcataagaaaaattaaagtcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaa |
279 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || | ||||||||||||||||||||| | ||||||||||| |||||| | |||||||||||||||||||| |
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|
| T |
47667474 |
gaatacattatacattgaactctttgttctta-gtaaaattaaagtcaaaatcagcgacttaggtaagtaaaataggtatatgaattagtataattagaa |
47667572 |
T |
|
| Q |
280 |
attaacaaccnnnnnnnnnctcacgccacctttgtgtaatttgtacaaaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgta |
379 |
Q |
| |
|
|| || | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
47667573 |
ataaaata-----aaaaaactcacgccagctttgtgtaatgtgtacaaaatgagaaccaatcaaaattgttgtttcacaaatctatctgtagactatgta |
47667667 |
T |
|
| Q |
380 |
gaatccatatgctgaacaatcgaaacaaaaaataaaacataggaatctcaatatcaagtcaaattgttggctttttgacctctctgttggctttggataa |
479 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||| | ||| |||| |
|
|
| T |
47667668 |
gaatccatatg-tgaacaactgaaacaacaaataaaacatacaaatttcaatatcaagttaaactgttggc-ttttgacctctctct----cttgaataa |
47667761 |
T |
|
| Q |
480 |
atacatttaga-------gagagggtgagggaaaaagtgacttgagcttgcgtgagaaaagacagtatgggctaacatgtaaattatttaaaagtcaagg |
572 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||||||| || ||| |
|
|
| T |
47667762 |
atacatttaaagagagaggagagggtgagggaaaaagtgagttgaacttgcgtgagaaaagacagtatggaccaacatgtaaattatttaaaaatctagg |
47667861 |
T |
|
| Q |
573 |
gtgttttcgtatttt |
587 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
47667862 |
gtgtatttgtatttt |
47667876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 47667414 - 47667474
Alignment:
| Q |
163 |
aaaattctagagatgatgaatacataatacattgaaccctttgttcataagaaaaattaaag |
224 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
47667414 |
aaaattctagagaggatgaatacataatacattgaaccctttgttcat-agtaaaattaaag |
47667474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 91 - 281
Target Start/End: Complemental strand, 26764727 - 26764537
Alignment:
| Q |
91 |
caatattgtgacagccatgggagatcaggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataat |
190 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26764727 |
caatattgtgacaaccatgggagattaggtgtgtatatatcaattaatatcagacttctatataacaaatacaaaattctagagatgatgaatacataat |
26764628 |
T |
|
| Q |
191 |
acattgaaccctttgttcataagaaaaattaaagtcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaat |
281 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26764627 |
acattgaaccatttgttcataagaacaattaaagtcaaaatcagcaaattaggtgagtaaaataggaaaataaattagtataattagaaat |
26764537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 19638239 - 19638060
Alignment:
| Q |
91 |
caatattgtgacagccatgggagatcaggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataat |
190 |
Q |
| |
|
|||| |||||||| |||||||||| ||||| |||||||||||||||| || |||| ||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
19638239 |
caatcttgtgacaaccatgggaga---ggtgtttatatatcaattaataacatactcatatattcaaaagacaaaattctagagaggatgaatacataat |
19638143 |
T |
|
| Q |
191 |
acattgaaccctttgttcataagaaaaattaaagtcaaaatcagcaaattaggtaagtacaataggaaaatgaattagtataa |
273 |
Q |
| |
|
|| ||||||||||||| | |||| |||||||||||||||| || ||| |||||||| || || ||||| ||||| |||||||| |
|
|
| T |
19638142 |
accttgaaccctttgtacttaagtaaaattaaagtcaaaaccaacaacttaggtaaataaaagaggaatatgaagtagtataa |
19638060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 42618687 - 42618831
Alignment:
| Q |
117 |
aggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagagatgatgaatacataatacattgaaccctttgttcataagaaa |
216 |
Q |
| |
|
|||||| |||||||||||||||| || |||| ||||| || ||||||||| |||||| |||||||| ||||||| ||||||||||||| | |||| || |
|
|
| T |
42618687 |
aggtgtttatatatcaattaataacatactcatatattcaaaagacaaaattttagagaggatgaatagataataccttgaaccctttgtacttaagtaa |
42618786 |
T |
|
| Q |
217 |
aattaaagtcaaaatcagcaaattaggtaagtacaataggaaaat |
261 |
Q |
| |
|
|||||||||||||| || ||| |||||||| || || |||||||| |
|
|
| T |
42618787 |
aattaaagtcaaaaccaacaacttaggtaaataaaagaggaaaat |
42618831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 580
Target Start/End: Original strand, 42618867 - 42618907
Alignment:
| Q |
540 |
tgggctaacatgtaaattatttaaaagtcaagggtgttttc |
580 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
42618867 |
tgggccaacatgtaaattatttaaaagttaggggtgttttc |
42618907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 2391178 - 2391098
Alignment:
| Q |
92 |
aatattgtgacagccatgggagatcaggtgtgtatatatcaattaatagcagactcctatataacaacgacaaaattctagaga |
175 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||||||||| || |||| ||||| || |||||||||||||||| |
|
|
| T |
2391178 |
aatattgtgacaaccatgagaga---ggtgtgtatatatcaattaataacatactcatatattcaaaagacaaaattctagaga |
2391098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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