View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_184 (Length: 302)
Name: NF1345_low_184
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_184 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 10417674 - 10417939
Alignment:
| Q |
27 |
gtggtgctttgtccctcataagttaatagcattaattggaaaacaaaataagtaggataagaaatgcgatgggttcatggagtctggttagttgagagac |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10417674 |
gtggtgctttgtcactcataagttaatagcattaattggaaaacaaaataagtaggataagaaatgcgatgtgtttatggagtctggttagttgagagac |
10417773 |
T |
|
| Q |
127 |
aaaaatctaattttaaggtgacaaaatggatccatctgtacatatcccatctaacccatcttaagcaaaatctatataaaattcatccatcaaacaagaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10417774 |
aaaaatctaattttaaggtgacaaaatggatccatctgtacatatcccatctaacccatcttaagcaaaatctatataaaattcatccatcaaacaagaa |
10417873 |
T |
|
| Q |
227 |
aaatctaaaatacctgaattcaatccatacatttaacaccaaagattattttgaatccaccctttg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10417874 |
aaatctaaaatacctgaattcaatccatccatttaacgccaaagattattttgaatccaccctttg |
10417939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University