View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_185 (Length: 302)
Name: NF1345_low_185
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_185 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 9659456 - 9659172
Alignment:
| Q |
8 |
atttttgatgggttttattggtgatggttcacatgaaggtagtgttagtaactatggaggacaaggttcatcatgttcatggaagtttttaactagaagg |
107 |
Q |
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| T |
9659456 |
atttttgatgggttttattggtgatggttcacatgaaggtagtggtagtaaccatggaggacaaggttcatcatgttcatggaagtttttaactagaagg |
9659357 |
T |
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| Q |
108 |
aaaaaggttgagaatagcaacaattctaatcatggagtgcaacttgttaaggagttaactattcctcatcttatggcaattggtaattcatttttcaatc |
207 |
Q |
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| T |
9659356 |
aaaaaggttgagaatagcaacaattctaatcatggagtgcaacttgttaaggagttaactattcctcatcttatggcaattggtaattcatttttcaatc |
9659257 |
T |
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| Q |
208 |
tcttgaaatttttgtcttttgaaacatgtttttcatcttgttaaggttgttgtatggatttgatctttttcagttctagcctttg |
292 |
Q |
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| T |
9659256 |
tcttgaaatttttgtcttttgtaacatgtttttcatcttgttaaggttgttgtatggatttgatctttttcagttctagcttttg |
9659172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 9642350 - 9642188
Alignment:
| Q |
35 |
ttcacatgaaggtagtgttagtaactatggaggacaaggttcatcatgttcatggaagtttttaactagaaggaaaaaggttgagaatagcaacaattct |
134 |
Q |
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| T |
9642350 |
ttcacaagagggtagtggtagtgattatggaggacaaggttcatcatgttcatggaggtttttaactagaaggaaaaaggttgacaatagcagcaattct |
9642251 |
T |
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| Q |
135 |
aatcatggagtgcaacttgttaaggagttaactattcctcatcttatggcaattggtaattca |
197 |
Q |
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| T |
9642250 |
catcatggagtgcaacttgctaaggagttaactattcctcatcttatggcaattggtaattca |
9642188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 9634164 - 9634008
Alignment:
| Q |
54 |
agtaactatggaggacaaggttcatcatgttcatggaagtttttaactagaaggaaaaaggttgagaatagcaacaattctaatcatggagtgcaacttg |
153 |
Q |
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| T |
9634164 |
agtaattatggagaacaaggttcatcatgttcatggagttttttaa---gaaggaagaaggttaacaacaacagcaattct---catggagtgcaacttg |
9634071 |
T |
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| Q |
154 |
ttaaggagttaactattcctcatcttatggcaattggtaattcatttttcaatctcttgaaat |
216 |
Q |
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| T |
9634070 |
ctaaggagttaactgttcctcatctcatggcaattggtaattctttttcctatctcttgaaat |
9634008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 9619997 - 9619840
Alignment:
| Q |
60 |
tatggaggacaaggttcatcatgttcatggaagtttttaactagaaggaaaaagg---------------ttgagaatagcaacaattctaatcatggag |
144 |
Q |
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| T |
9619997 |
tatggtggacaaggttcatcatgttcatggaggtttttaacaagaaggaaaaaggttgacaattctcatgttgagaatatcaacaagaactctcatggag |
9619898 |
T |
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| Q |
145 |
tgcaacttgttaaggagttaactattcctcatcttatggcaattggtaattcattttt |
202 |
Q |
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| T |
9619897 |
tacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattcattttt |
9619840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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