View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_189 (Length: 299)
Name: NF1345_low_189
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_189 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 10418009 - 10418299
Alignment:
| Q |
12 |
taatatatccaagacattgcatattataggaacaaaccatataatataattgatccaattggactgaggaagatggttagttgggttgagatcttcac-- |
109 |
Q |
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| T |
10418009 |
taatatatccaagacattgcatattataggaacaaaccatataatataattgatccaattggaccgaggaagatggttggttgggttcagatcttcacaa |
10418108 |
T |
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| Q |
110 |
---------aaaacggtgacttgacctacaagtcacatgcgcctagcgcctatacccatttgccaagcgcatgtgcctggtatgttaggcgcctggtgcc |
200 |
Q |
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| T |
10418109 |
aaaagtcacaaaacggtgacttgacctacaagtcacaggcgctaagcgcctatacccattcgccaggcgcatgtgcctggtatgttaggcgcctggtgcc |
10418208 |
T |
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| Q |
201 |
tcatttcatgcgcttgggcgcctttggatgccccgttctgtacacctagtcgcttgtgactgcgttctgtgctgaaatgtctatattcttcg |
292 |
Q |
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| T |
10418209 |
tcctttcatgcgcttgggcgcctttggacgccccgttctgta-gcctagtcgcttgtgactgcgttctgtgctgaaatgtctattttcttcg |
10418299 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 22470923 - 22470850
Alignment:
| Q |
139 |
gcgcctagcgcctatacccatttgccaagcgcatgtgcctggtatgttaggcgcctggtgcctcatttcatgcg |
212 |
Q |
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||||| ||||||||||||||| |||| |||||||| |||| || || |||||||||| ||| |||| |||||| |
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| T |
22470923 |
gcgccaagcgcctatacccatgcgccatgcgcatgtacctgctaagtcaggcgcctggcgccccattccatgcg |
22470850 |
T |
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