View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_19 (Length: 621)
Name: NF1345_low_19
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 25 - 621
Target Start/End: Original strand, 14009054 - 14009626
Alignment:
| Q |
25 |
gtgaacaattagataacatgattactaacatattggtaaaccattcatgattttaacgctgaattagctgtgatgattgtcatatttcattgttgtttgt |
124 |
Q |
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| T |
14009054 |
gtgaataattagataacatgattactaacatattggtaaaccattcatgattttaacgctgaa---gctgtgatgattgtcatatttcattgttgtttgt |
14009150 |
T |
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| Q |
125 |
atcagctaatatttaacttctttagaactgatgcttatacttatctttgtgtcagcaggaccttaatcaatgtaaagtgaaagacaaggtagaaatgaaa |
224 |
Q |
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| T |
14009151 |
atcagctaatatttaacttctttaaaactgatgcttatacttatctttgtgtcagcaggaccttaatcaatgtaaagtgaaagacaaggtagaaatgaaa |
14009250 |
T |
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| Q |
225 |
aataataagtatatagatcctttcctcaatgtacattatttttatatgggcaagttgaaggcaagtagcttctgcctgggcaaggaaggtgttgggttaa |
324 |
Q |
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| T |
14009251 |
aataataagtatatagatcctttcctcaatgtacattatttttatatgggcaagttgaaggcaagtagcttctgcctgggcaaggaaggtgttgggttaa |
14009350 |
T |
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| Q |
325 |
aaatttgacgtgatgctctatgcttttggacttttgctctatgctctctgtgtttaaagaaaattactacatcaaatatatgtttctataatgcatttgt |
424 |
Q |
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| T |
14009351 |
aaatttgacgtgatgctctat---------------------gctctctctgtttaaagaaaattactacatcaaatatatgtttttataatgcatttgt |
14009429 |
T |
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| Q |
425 |
aatgataagctacaaatttagttggatatgatgattttcaaatttagtagttaatgcagataaaatatttctacgattaataatttacccatgcaagaat |
524 |
Q |
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| T |
14009430 |
aatgataagctacaaatttagttggatatgatgattttcaaatttagtagttaatgcagataaaatatttctacgattaataatttacccatgcaagaat |
14009529 |
T |
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| Q |
525 |
tccatttaaatttcattggagacattagttgtatcacttaaacatgtaggagtattaacaaaagctggcatataccttctacaaccggtgttttcgc |
621 |
Q |
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| T |
14009530 |
tccatttaaatttcattggagacattagttgtatcacttaaacatgtaggagtattaacaaaagttggcatataccttctacaaccggtgttttcgc |
14009626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 40910593 - 40910754
Alignment:
| Q |
26 |
tgaacaattagataacatgattactaacatattggtaaaccattcatgattttaacgctgaattagct--gtgatgattgtcatatttcattgttgtttg |
123 |
Q |
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| T |
40910593 |
tgaaccattcgataacatgattactaacatattgataaaccattcatgatttcaccaatgag---gctttgtgtggattgtcatatttcattgtt---tg |
40910686 |
T |
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| Q |
124 |
tatcagctaatatttaacttcttt-agaactgatgcttatacttatctttgtgtcagcaggaccttaa |
190 |
Q |
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| T |
40910687 |
tatcagatcatatttaacttcttttacaactgatgcacatacttatctttgtgtcagcagtaccttaa |
40910754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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