View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_192 (Length: 296)
Name: NF1345_low_192
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_192 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 3780058 - 3779887
Alignment:
| Q |
112 |
cttaatgatgtcttattttatatatgaaatattcacacgnnnnnnngaagaagtttaagcatttttt-aagaagatatttaggaattttattatcaactt |
210 |
Q |
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| T |
3780058 |
cttaatgatgtcttattttatatatgaaatattcacacgaaaaaa-gaagaagtttaagcatttttttaagaagatatttaggaattttattatcaactt |
3779960 |
T |
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| Q |
211 |
tgatatgctctcgatgttgtagcatttggataactcctacgcatctcttcgacttttattaaacatacaacct |
283 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3779959 |
tgatatgctctcaatgttgtagcatttggataactcctacgcatctcttcgacttttattaaacatataacct |
3779887 |
T |
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