View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_197 (Length: 290)
Name: NF1345_low_197
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_197 |
 | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0746 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 22)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 24916905 - 24917149
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24916905 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttccgtatgcacttgggttggtgtaact |
24917004 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatgatcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24917005 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatgatcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttat |
24917104 |
T |
|
| Q |
232 |
acttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24917105 |
acttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
24917149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 25731071 - 25730826
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
25731071 |
tcttctagctttcaaatccctaattacttcagacccttatgatgtgttggctaataattggtcaacttcctcttctgtatgcaattgggttggtgtaact |
25730972 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatg-atcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| | | ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25730971 |
tgtgatgagcgacacggtagagtccacagtttgattctcctaaatatgtgtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgtta |
25730872 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25730871 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
25730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 25599648 - 25599414
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
25599648 |
tcttatagcattcaaatccctaattacttcagacccctatgatatgttggctaataattggtcaacctcctcttctgtatgcacttgggctggtgtaact |
25599549 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
25599548 |
tgtgatgagcgacatggtagagtccatagtttgattctccgagacatgagtcttagaggtaccgtttccccaaacatagggaatttgtcattccttgtta |
25599449 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcag |
265 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
25599448 |
tgcttgaccttaaaaataatagcttcggtggtcag |
25599414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 31 - 273
Target Start/End: Complemental strand, 25380084 - 25379841
Alignment:
| Q |
31 |
ttcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaac |
130 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25380084 |
ttcttctagcattcaaatccctgattacttcagacccatatgatatgttggctaataattggtcaacctcctcttctgtatgcaattgggttggtgtaac |
25379985 |
T |
|
| Q |
131 |
ttgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtt |
229 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
25379984 |
ttgtgatgagcgacacaatagagtccatagtttgatcctccaaaacatgagtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgtt |
25379885 |
T |
|
| Q |
230 |
atacttgacctcaaaaacaatagcttcggtggtcagcttcctac |
273 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
25379884 |
atacttgacctaaaaaataatagcttcggtggtcagtttcctac |
25379841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 25486272 - 25486039
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||| |
|
|
| T |
25486272 |
tcttatagcattcaaatctttaattacttcagacccctatgatatgttggctaataattggtcaacctcctcttctgtgtgcagttgggttggtgtcact |
25486173 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
25486172 |
tgtgatgagcgtcacggaagagtatatagtttgattctccgaaacatgagtcttagaggtactgtttccccaaatttagggaatatgtcctttcttgtta |
25486073 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtca |
264 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
25486072 |
tacttgacctcaaaaacaatagtttcggtggtca |
25486039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 25711248 - 25711003
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||| |||| || |||| |||||||||||||||| | ||||||||||||| |||||||| ||||||| |
|
|
| T |
25711248 |
tcttctagcattcaaatcactaattacttcagacccttatgatatgttgtctaataattggtcaactgcatcttctgtatgcaattgggttggtgtaact |
25711149 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||| ||||| ||||||||||| | ||||||||||||| | | |||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25711148 |
tgtgacgagcgtcacggtagagtccaaagtttgattctccaaaatatgagtcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgtta |
25711049 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25711048 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
25711003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 25688609 - 25688368
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| | |||||||| ||||||| |
|
|
| T |
25688609 |
tcttctagcattcaaatctttaattacttcagacccctatgatatgttggctaataattggtcaacatcctcttctgtatgtagttgggttggtgtaact |
25688510 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
25688509 |
tgtgatgagcgacacggaagagtccatagtttaattctccaaaacatgagtcttagaggtattgtttccccaaacttggggaatatgtccttcctagtta |
25688410 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25688409 |
tacttgacctcaaaaacaatagcttcagtggtcagtttccta |
25688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 25433839 - 25433598
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||| ||||| ||||||| |||| ||| ||||||| |
|
|
| T |
25433839 |
tcttctagcattcaaatctctaattacttcagacccttatgatgtgttggctaataattggtcaacctcatcttccgtatgcaattggattggtgtaact |
25433740 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25433739 |
tgtgatgagcggcacggtagagttcacagtttgattctccgaaacatgagtcaaggaggtaccgtttccccaaacttggggaatctgtccttccttgtta |
25433640 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
25433639 |
tacttgacctaaaaaacaatagattcggtggtcagtttccta |
25433598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 25331463 - 25331218
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| || |||||||| ||||||||||||||||||| || |||| |||||||||||||||| |||||||||||||| | ||||| || ||||||| |
|
|
| T |
25331463 |
tcttctagcatttaaatccctcattacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgtaattgggctggtgtaact |
25331364 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||| || |||||||| | ||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25331363 |
tgtgatgagcggcatggtagagtccacagtttgattctccaaaacatgagtcttagaggcaccgtttccccaaacttggggaatctgtcctttcttgtta |
25331264 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
25331263 |
tacttgacctaaaaaataatagcttcggtggtcagtttcctacaga |
25331218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 25470240 - 25469995
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||| || ||| |||| |||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25470240 |
tcttctagcattcaaatccctcattacttcagacccttatgatatcttgtctaagaattggtcaacctcctcttctgtatgcaattgggttggtgtaact |
25470141 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||| |||| || ||||||| |
|
|
| T |
25470140 |
tgtgatgagcgacacggaagagtccgtagtttgattctccgaaacatgagtcttaaaggtaccgtttctccaaacttggggaatctgtcatttcttgtta |
25470041 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
25470040 |
tacttgacctaaaaaataatagcttcggtggtcagtttcttacaga |
25469995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 25408153 - 25407912
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||| || ||| |||| ||||||||||||||||||| |||||||| |||||||| ||| ||| |
|
|
| T |
25408153 |
tcttctagcattcaaatccctcattacttcagacccttatgatatcttgtctaagaattggtcaacctcctcttttgtatgcaattgggttggtgtcact |
25408054 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25408053 |
tgtgatgagcgacacggaagagtccatagtttgattctccgaaacatgagtcttaaaggtatcgtttccccaaacttagggaatttgtccttttttgtta |
25407954 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
|||||||| | ||||| |||||||| ||||||||| |||||| |
|
|
| T |
25407953 |
tacttgacataaaaaataatagctttggtggtcagtttccta |
25407912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 25428678 - 25428442
Alignment:
| Q |
37 |
tagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |
|
|
| T |
25428678 |
tagcattcaaatcactaattacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgcacttgggttggtgtcacttgcga |
25428579 |
T |
|
| Q |
137 |
tgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatactt |
235 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
25428578 |
tgagcgacacaacagagtccatagtttgattctccgaaacatgagtcttagaggtactgtttccccaaacctggggaatttgtcgttccttgttatactt |
25428479 |
T |
|
| Q |
236 |
gacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
| ||| |||||||||| |||||||| |||||| |
|
|
| T |
25428478 |
aatctctcccgcaatagcttcagtggtcagtttccta |
25428442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 25826109 - 25825899
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
25826109 |
tcttctagcattcaaatcactaattacttcagacccctatgatatgttgtctaataattggtcaacatcctcttctgtatgcacttgggttggtgtcgct |
25826010 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||| | |||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
25826009 |
tgtgatgagcgacacaacagagtccatagtttgaatctccaaaacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgtta |
25825910 |
T |
|
| Q |
231 |
tacttgacctc |
241 |
Q |
| |
|
||||| ||||| |
|
|
| T |
25825909 |
tacttaacctc |
25825899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 24890195 - 24890400
Alignment:
| Q |
37 |
tagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
24890195 |
tagcattcaaatcactaattacttcagacccctatgatatgttgtctaataattggtcaacatcctctcctgtatgcacttgggttggtgtcacttgtga |
24890294 |
T |
|
| Q |
137 |
tgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatactt |
235 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| |||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
24890295 |
tgagcgacacaacagagtccatagtttgaatctccataacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatactt |
24890394 |
T |
|
| Q |
236 |
gacctc |
241 |
Q |
| |
|
||||| |
|
|
| T |
24890395 |
aacctc |
24890400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 25501417 - 25501212
Alignment:
| Q |
37 |
tagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
25501417 |
tagcattcaaatcactaattacttcagacccctatgatatgttgtctaataattggtcaacatcctctcatgtatgcacttgggttggtgtcacttgtga |
25501318 |
T |
|
| Q |
137 |
tgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatactt |
235 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| |||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
25501317 |
tgagcgacacaacagagtccatagtttgaatctccataacatgagtcttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatactt |
25501218 |
T |
|
| Q |
236 |
gacctc |
241 |
Q |
| |
|
||||| |
|
|
| T |
25501217 |
aacctc |
25501212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 23262358 - 23262148
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| ||||||| |||||||||||| |||||| || | |||||| ||||||||||||||| ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
23262358 |
tcttctagcattcaaattcctaattacttcggaccccaataatccgttggtaaataattggtcaaccacctcttcagtatgcagttgggttggtgtaact |
23262259 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacat-gatcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||| || ||||||||||||||| | ||||||| |||| | |||| | |||||||||||| ||||||||||||||||||||| | || |||||||||| |
|
|
| T |
23262258 |
tgtgacgaccgacacggtagagttcacagtttgaatctcacaaacatgggtcttagaggtactgtttccccaaacttggggaatctatctttccttgtta |
23262159 |
T |
|
| Q |
231 |
tacttgacctc |
241 |
Q |
| |
|
|||||||||| |
|
|
| T |
23262158 |
aacttgacctc |
23262148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 25738407 - 25738312
Alignment:
| Q |
181 |
tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25738407 |
tcttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacaga |
25738312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 22880480 - 22880713
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||| || ||||||||||| ||||||| || |||||||||||||||||||| |||||| || |||||| |||||||| ||||||| |
|
|
| T |
22880480 |
tcttctagcattcaaatcacttattacttcagatccctatgatattttggctaataattggtcaacatcctctcctatatgcagttgggttggtgtaact |
22880579 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatg-atcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
|||||||| |||||| |||||| ||| |||||| |||| | ||||| | ||||||||||| ||||||| | | | |||||| |||| || ||||||| |
|
|
| T |
22880580 |
tgtgatgaacgacacaatagagtctatggtttgaatctcacaaacatgaaccttagaggtactatttccccgagcattgggaatatgtcgtttcttgtta |
22880679 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtca |
264 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| |
|
|
| T |
22880680 |
tacttgacctccacaacaatagctttggtggtca |
22880713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 272
Target Start/End: Complemental strand, 25687465 - 25687299
Alignment:
| Q |
107 |
tgtatgcacttgggttgatgtaacttgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaac |
205 |
Q |
| |
|
|||||||| |||||||| || ||||||||| | |||| |||||||||| | ||||||||||| ||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
25687465 |
tgtatgcaattgggttggtgcaacttgtgacgggcgatacggtagagtccacagtttgattctacgaaacatgagtcttagaggtaccgtttcgccaaac |
25687366 |
T |
|
| Q |
206 |
ttggggaatttgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
||| ||||| ||||| | || |||||||||||||| ||||| ||||||||| || ||||| |||||| |
|
|
| T |
25687365 |
ttgaggaatctgtccattctagttatacttgacctaaaaaataatagcttcagttgtcagtttccta |
25687299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 25635692 - 25635456
Alignment:
| Q |
37 |
tagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || ||| |||||||||||||||| | |||| |||||| | |||||||| ||| |||||||| |
|
|
| T |
25635692 |
tagcattcaaatcactaattacttcagacccctatgatattttgtctaataattggtcaactacatcttatgtatgtagttgggttggtgtcacttgtga |
25635593 |
T |
|
| Q |
137 |
tgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatactt |
235 |
Q |
| |
|
|||||||||| |||||| | ||||||| | | |||||| ||| |||| || |||| |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
25635592 |
tgagcgacacaatagagtcaacagtttgaaaatatcaaacatgagacttggaggcactatttctccaaacctggggaatttgtcgttccttgttatactt |
25635493 |
T |
|
| Q |
236 |
gacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||| |
|
|
| T |
25635492 |
aacctctcccacaatagtttcagtggtcagtttccta |
25635456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 25330609 - 25330539
Alignment:
| Q |
202 |
aaacttggggaatttgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| |||| || |||||| |
|
|
| T |
25330609 |
aaacttggggaacttgtccttccttgttatgcttgacctgaaaaacaatagcttcgatggttagtttccta |
25330539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 24891636 - 24891697
Alignment:
| Q |
211 |
gaatttgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
|||| |||| |||||||||| ||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
24891636 |
gaatctgtcattccttgttaagcttgacccgaaaaacaatagcttcgatggtcagtttccta |
24891697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 25364 - 25605
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaact |
131 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
25364 |
tcttctagcattcaaatccctaattacttcagacccttatgatgtgttggctaataattggtcaacctcctcttccgtatgcaattggattggtgtaact |
25463 |
T |
|
| Q |
132 |
tgtgatgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgtta |
230 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25464 |
tgtgatgagcggcacggtagagtccacagtttgattctccgaaacatgagtcttagaggtaccgtttccccaaatttggggaatatgtccttccttgtta |
25563 |
T |
|
| Q |
231 |
tacttgacctcaaaaacaatagcttcggtggtcagcttccta |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25564 |
tacttgacctcaaaaacaatagcttcggtggtcagtttccta |
25605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 270
Target Start/End: Original strand, 41077 - 41295
Alignment:
| Q |
52 |
taattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtgatgagcgacacggtag |
151 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| || |||||||| || |||| || ||||| ||| |||||||||||||||||||| || |
|
|
| T |
41077 |
taattacttcagacccctatgatatgttggctaataattggtccacatcctcttcagtgtgcagtt-ggttggtgtcacttgtgatgagcgacacggaag |
41175 |
T |
|
| Q |
152 |
agtttatagtttgattctccgacacatg-atcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatacttgacctcaaaaacaat |
250 |
Q |
| |
|
||| |||||||||||||| || ||||| |||||| |||||| |||| ||| ||||||||||| | || |||||| ||||||| ||| || ||||| |
|
|
| T |
41176 |
agtccatagtttgattctctgaaacatgaatcttataggtactgttttccctgacttggggaatctttcgttccttattatactagacatctcccacaat |
41275 |
T |
|
| Q |
251 |
agcttcggtggtcagcttcc |
270 |
Q |
| |
|
||||||||||| ||| |||| |
|
|
| T |
41276 |
agcttcggtggccagtttcc |
41295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 10332365 - 10332136
Alignment:
| Q |
37 |
tagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtga |
136 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || | || |||||||||||||||||||||| || ||||||| |||||||| ||| |||||| |
|
|
| T |
10332365 |
tagcattcaaatcactaattacttcagacccctatgatatgctgactaataattggtcaacctcctcatcggtatgcaattgggttggtgttgtttgtga |
10332266 |
T |
|
| Q |
137 |
tgagcgacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatactt |
235 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||| | |||||| |||||||| | | ||||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
10332265 |
tgagcgacatggtagagtctacagtttgattctccaaaacatgaggcttagaggcaacatttccccaaacttggggaacttgtcctttcttgttacactt |
10332166 |
T |
|
| Q |
236 |
gacctcaaaaacaatagcttcggtggtcag |
265 |
Q |
| |
|
||||| ||||| |||||||| ||||||||| |
|
|
| T |
10332165 |
gaccttaaaaataatagctttggtggtcag |
10332136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 23394137 - 23394334
Alignment:
| Q |
42 |
ttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaacctcctcttctgtatgcacttgggttgatgtaacttgtgatgagc |
141 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
23394137 |
ttcaaatccctcattacttcagaccccaatgatatgttagctaataattggtcaacctcctcttctgtatgcagttgggttggtgtcacttgtgatgaga |
23394236 |
T |
|
| Q |
142 |
gacacggtagagtttatagtttgattctccgacacatga-tcttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatacttgac |
238 |
Q |
| |
|
||||| |||||| | || |||| ||||||| |||||| |||||| ||||| |||| ||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
23394237 |
gacaccatagagtccacagcttgactctccgaaacatgagtcttagtggtacaatttctccaaagttggggaatctgtctttccttgttatacttgac |
23394334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0746 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0746
Description:
Target: scaffold0746; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 4510 - 4445
Alignment:
| Q |
32 |
tcttatagctttcaaatccctaattacttcagacccctatggtacgttggctaataattggtcaac |
97 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
4510 |
tcttctagcattcaaatccctaattacttcagacccttatgatgtgttggctaataattggtcaac |
4445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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