View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_199 (Length: 290)
Name: NF1345_low_199
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_199 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 47 - 253
Target Start/End: Original strand, 1855362 - 1855568
Alignment:
| Q |
47 |
ccgaaaaagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatct |
146 |
Q |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttccctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagtttcggatatct |
1855461 |
T |
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| Q |
147 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
246 |
Q |
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| T |
1855462 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
1855561 |
T |
|
| Q |
247 |
acaggtt |
253 |
Q |
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||||||| |
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| T |
1855562 |
acaggtt |
1855568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 1817823 - 1817623
Alignment:
| Q |
53 |
aagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacag |
152 |
Q |
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| T |
1817823 |
aagcaaatagagcttatctcatagtttctcctcacacaatttcaagtacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacag |
1817724 |
T |
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| Q |
153 |
taatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggt |
252 |
Q |
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| T |
1817723 |
taatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgattttaaacctaaaatagtaattgggaataacactggaaaatgcacaggt |
1817624 |
T |
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| Q |
253 |
t |
253 |
Q |
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| |
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| T |
1817623 |
t |
1817623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 9220619 - 9220511
Alignment:
| Q |
94 |
tcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaa |
193 |
Q |
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|||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||| || ||| | | || ||||| || || |||||||||| |
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| T |
9220619 |
tcaagcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaa |
9220520 |
T |
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| Q |
194 |
gatgttatg |
202 |
Q |
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| T |
9220519 |
gatgttatg |
9220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
106 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
153 |
Q |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 37566852 - 37567041
Alignment:
| Q |
69 |
tctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgcc |
168 |
Q |
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|||||||||| |||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37566852 |
tctcagagttccttctctcacaatttcaagcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgcc |
37566951 |
T |
|
| Q |
169 |
acttattctacaggatgc-------ttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacagg |
251 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| |
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| T |
37566952 |
acttattctacaggatgcttaacagttaacaagatgttatgattttgatcctaaaatggtaactgggaataacactggaaaatgcacagg |
37567041 |
T |
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