View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_20 (Length: 620)
Name: NF1345_low_20
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 283 - 591
Target Start/End: Complemental strand, 24634636 - 24634328
Alignment:
| Q |
283 |
gtttctgttgaaaccttgaaatttacttataaaagtttacaattgaaacataaattagaagatcctgtttactagttagctattgttccttgttatcttc |
382 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24634636 |
gtttgtgttgaaaccttgaaatttacttatagaagtttacaattgaaacataaattagaagatcctgtttactacttaactattgttccttgttatcttc |
24634537 |
T |
|
| Q |
383 |
ttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcacgttatcaataaatgagacatttcatttacaagaaat |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24634536 |
ttcactttcatatagactgatgtataaataaggtccattgagttcattatgatcaattcatcaagttatcaataaatgagacatttcatttacaagaaat |
24634437 |
T |
|
| Q |
483 |
cagaactaggcttttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaaccttcattttcatatcagaaccggactggca |
582 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24634436 |
cagaactaggctcttgtaagacttgtttccagcaataaaacacaataatctttagatacacatgtttaaccttcattttcatatcagaaccggactggca |
24634337 |
T |
|
| Q |
583 |
tggagagac |
591 |
Q |
| |
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||||||||| |
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| T |
24634336 |
tggagagac |
24634328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 24628559 - 24628511
Alignment:
| Q |
290 |
ttgaaaccttgaaatttacttataaaagtttacaatt-gaaacataaat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24628559 |
ttgaaaccttgaaatttacttataaaagtttacaattagaaacataaat |
24628511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 135 - 325
Target Start/End: Original strand, 42542182 - 42542372
Alignment:
| Q |
135 |
ttaacatcattttagttaagccattaccatccactacaaccctaaatgcatccagcactcacaaaccaaccagaaaagaacctcagatttctcgctaaga |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42542182 |
ttaacatcattttagttaagccattaccatccactacaaccctaaatgcatccagcactcacaaaccaaccagaaaagaacctcagatttctcgctaaga |
42542281 |
T |
|
| Q |
235 |
tgaccatattacaacccacaattacattttactcccagcacctaagcggtttctgttgaaaccttgaaatttacttataaaagtttacaat |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42542282 |
tgaccatattacaacccacaattacattttactcccagcacctaagcggtttctgttgaaaccttgaaatttacttataaatgtttacaat |
42542372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 49244558 - 49244674
Alignment:
| Q |
29 |
actattaaaaccgaagaggttctaaatgttgaacgtgaaagaaggaacaaattgaagcaaatgttcactcacctcactaccactgtccctactctccacc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49244558 |
actattaaaaccgaagaggttctaaatgttgaacgtgaaagaaggaacaaattgaagcaaatgttcactcacctcactaccactgtccctactctccacc |
49244657 |
T |
|
| Q |
129 |
ccaatgttaacatcatt |
145 |
Q |
| |
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||||||||||||||||| |
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| T |
49244658 |
ccaatgttaacatcatt |
49244674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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