View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_201 (Length: 285)
Name: NF1345_low_201
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_201 |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3766030 - 3766071
Alignment:
| Q |
1 |
tggtacatgagtcccgtatgccaccacatctgcaccaaatgc |
42 |
Q |
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| T |
3766030 |
tggtacatgagtcccgtatgccaccacatctgcaccaaatgc |
3766071 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 41858548 - 41858512
Alignment:
| Q |
186 |
taaaactgaaacactgcaacttaaacaatggggaaag |
222 |
Q |
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| T |
41858548 |
taaaactgaaacactgaaacttaaacaatggggaaag |
41858512 |
T |
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