View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_203 (Length: 282)

Name: NF1345_low_203
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_203
NF1345_low_203
[»] chr7 (2 HSPs)
chr7 (92-277)||(10417497-10417681)
chr7 (29-71)||(10417454-10417496)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 10417497 - 10417681
Alignment:
Q  92 atgaattttcttctgttcacactcaaaagcaaaagnnnnnnnnaagagtgaaggaagcaattatgtcctctccacccactgaccacttacccnnnnnnnn 191  Q
    ||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||            
T  10417497 atgaattttcttctgttcagactcaaaagcaaaagttttttt-aagagtgaaggaagcaattatgtcctctccacccactgaccacttacccttttcttt 10417595  T
Q  192 nnnnnnnnnnnnnnncgtacaaaatcctttttcttatcacaaattcattaattcatcagttgaacttttttgctttctgtggtgct 277  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10417596 atcttttttaatttttgtacaaaatcctttttcttatcacaaattcattaattcatcagttgaacttttttgctttttgtggtgct 10417681  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 10417454 - 10417496
Alignment:
Q  29 accaatatctttttgtaagtaattctgatgtaaccttttgttc 71  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10417454 accaatatctttttgtaagtaattctgatgtaaccttttgttc 10417496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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