View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_209 (Length: 282)
Name: NF1345_low_209
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_209 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 3713968 - 3713692
Alignment:
| Q |
2 |
taagggcaagaaaatgagatatgagaaacaaacaaccacttgtctgatttaggaattttttacatgtttaaattgacagtgtccataaggtgttacttca |
101 |
Q |
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| T |
3713968 |
taagggcaagaaaatgagatatgagaaacaa----ccacttgtctgatttaggaattttttacatgtttgaattgacagtgtccatgaggtgttacttca |
3713873 |
T |
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| Q |
102 |
atggtaaaaatttgactttcgtaattcaaaagacaacatcaaatcttataaaacaatcgtaaaatgattatcaacgacaccgttattaagaagaactttt |
201 |
Q |
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| T |
3713872 |
atagtaaaaatttgacttttgtaactcaaaagacaacatcaaatctcataaaataattgtaaaatgattatcaacgacactattattaataagaactttt |
3713773 |
T |
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| Q |
202 |
cctccagcaactttataaatgtgaagttgaatttgatcaaattagggtattctactattatttttgtaaaagttgcacttt |
282 |
Q |
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| T |
3713772 |
ccttcaacgactttataaatgtaaagttgaatttggtcaaattagggtatgctactattatttttataaaagttgcacttt |
3713692 |
T |
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