View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_21 (Length: 608)
Name: NF1345_low_21
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 99 - 602
Target Start/End: Complemental strand, 15982249 - 15981746
Alignment:
| Q |
99 |
ataagtgccacaagagaaaactaaaaagggtatcaatcaaagcctaaagtgcccttacaagttgttaagaagtcgcttcactgccacctcagatccattg |
198 |
Q |
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| T |
15982249 |
ataagtgccacaagagaaaactaaaaagggtatcaatcaaagcctaaagtgcccttacaagttgttaagaagtcgcttcactgccacctcagatccattg |
15982150 |
T |
|
| Q |
199 |
atcaatcttcccttataaacaactccatatccgccttcaccaataacattctcagccgagaagcggttagtcgaaaattcgagatctctaagtgtgaacc |
298 |
Q |
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| T |
15982149 |
atcaatcttcccttataaacaactccatatccgccttcaccaataacattctcagccgagaagcggttagtcgaaaattcgagatctctaagtgtgaacc |
15982050 |
T |
|
| Q |
299 |
aatgaccccatccaagatgagaaccttcagacaagccaactagaggagatgcagttaccatatactgcttcttaacagttccaaagtttccatcctctgc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15982049 |
aatgaccccatccaagatgagaaccttcagacaagccaaccagaggagatgcagttaccatatactgcttcttaacagttccaaagtttccatcctctgc |
15981950 |
T |
|
| Q |
399 |
tgatattaaacttaatcctctctcgtggtgataaatcgaactacactgactgatattatcagcatcactggatttactcaaatgaacaaacaacttatcc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15981949 |
tgatattaaacttaatcctctctcgtggtgataaatcgaactacactgactgatattatcaggatcactggatttactcaaatgaacaaacaacttatcc |
15981850 |
T |
|
| Q |
499 |
gaattcttatcacttgtcatgttgtcgtggacatgaatagacacactatctacttgaccgttagaaggttgcacttcaaccctgtcaactttgatattct |
598 |
Q |
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| T |
15981849 |
gaattcttatcgcttgtcatgttgtcgtggacatgaatagacacactatctacttgatcgttagaaggttgcacttcaaccctgtcaactttgatatcct |
15981750 |
T |
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| Q |
599 |
tcga |
602 |
Q |
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|||| |
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| T |
15981749 |
tcga |
15981746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 151 - 321
Target Start/End: Complemental strand, 39828363 - 39828193
Alignment:
| Q |
151 |
ccttacaagttgttaagaagtcgcttcactgccacctcagatccattgatcaatcttcccttataaacaactccatatccgccttcaccaataacattct |
250 |
Q |
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||||||||||||||||||||| |||||| || ||||||| ||||||||||| ||| ||||| ||||||||||||||||| || || || | || |||| |
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| T |
39828363 |
ccttacaagttgttaagaagtttcttcaccgcaacctcagttccattgatcagtctgcccttgtaaacaactccatatccaccctcgccgagaatgttct |
39828264 |
T |
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| Q |
251 |
cagccgagaagcggttagtcgaaaattcgagatctctaagtgtgaaccaatgaccccatccaagatgagaa |
321 |
Q |
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| T |
39828263 |
cagttgagaaacgattagtcgcttgttccagatctctaagtgtaaaccagtggccccacccaagatgagaa |
39828193 |
T |
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