View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_211 (Length: 275)
Name: NF1345_low_211
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_211 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 4626806 - 4626619
Alignment:
| Q |
54 |
gaaggaccttcttaactttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctatt |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4626806 |
gaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctatt |
4626707 |
T |
|
| Q |
154 |
gttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggacctttgc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4626706 |
gttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacgttcctttctgtatataccattggacctttgc |
4626619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 4299112 - 4299283
Alignment:
| Q |
68 |
actttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacactta |
167 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| || ||||| |
|
|
| T |
4299112 |
actttataaggagtacaaatccaaatgatgtcatggtagaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatactta |
4299211 |
T |
|
| Q |
168 |
cgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |||| |||| ||||||| ||||||||||| |
|
|
| T |
4299212 |
tgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggaccttt |
4299283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 4259445 - 4259616
Alignment:
| Q |
68 |
actttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacactta |
167 |
Q |
| |
|
|||||||||||| ||| || | ||||||||||||||||| ||| |||| |||||||||||| ||||| |||||||| ||||| ||||| |||||||| |
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|
| T |
4259445 |
actttataaggattacagatccaaatgatgtcatggtagattttttcatggaagcggcagatggattttgtagagcatcagctatcgtttttaacactta |
4259544 |
T |
|
| Q |
168 |
cgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |||| |||| ||||| | ||||||||||| |
|
|
| T |
4259545 |
tgatgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggaccttt |
4259616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 4622958 - 4622810
Alignment:
| Q |
91 |
aatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | | || |||||| |||| || ||||| ||||||||||| ||||| | |
|
|
| T |
4622958 |
aatgatgtcatggtagaatttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcga |
4622859 |
T |
|
| Q |
191 |
tgaatgcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
|||||||||||||||| | |||| ||| | |||||| |||||||||| |
|
|
| T |
4622858 |
tgaatgcgctctattcaatgttcccatctttgtataccgttggaccttt |
4622810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 4602647 - 4602460
Alignment:
| Q |
54 |
gaaggaccttcttaactttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctatt |
153 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||||| || | |||||| | ||||||||||| | ||||| |||||||||||| | |||| || ||||| |
|
|
| T |
4602647 |
gaaggacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactatt |
4602548 |
T |
|
| Q |
154 |
gttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggacctttgc |
241 |
Q |
| |
|
|||| || |||||| ||||||||||| |||||||||||||||| || ||||||| |||| |||| ||||||| || |||||||||| |
|
|
| T |
4602547 |
cttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc |
4602460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 4255944 - 4256049
Alignment:
| Q |
100 |
atggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgc |
199 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||| | |||||| ||||||| | |
|
|
| T |
4255944 |
atggtagaatttttcattgaagcggcaaatcattttcatagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctc |
4256043 |
T |
|
| Q |
200 |
tctatt |
205 |
Q |
| |
|
|||||| |
|
|
| T |
4256044 |
tctatt |
4256049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 233
Target Start/End: Original strand, 4514398 - 4514577
Alignment:
| Q |
54 |
gaaggaccttcttaactttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctatt |
153 |
Q |
| |
|
||||||||||| | | |||||| |||||||| || |||||||| | ||| |||||||| || ||||| || ||||||| |||| ||||| || |||||| |
|
|
| T |
4514398 |
gaaggaccttcctgattttatacggacaacagatgctaatgatttgatgttagaatttatctttgaaatggtagatagacttcatagagcttctgctatt |
4514497 |
T |
|
| Q |
154 |
gttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattgg |
233 |
Q |
| |
|
|||| || |||| |||| |||||| ||||||| |||||||| || ||||||| ||| |||| |||| |||||||| |
|
|
| T |
4514498 |
tttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctcccttctctatacaccattgg |
4514577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 4481477 - 4481369
Alignment:
| Q |
125 |
cagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtata |
224 |
Q |
| |
|
|||||| || ||| |||||||| ||| ||||| |||| |||| ||||||||||| ||||||| |||||| | |||||||||| ||||| |||| |||| |
|
|
| T |
4481477 |
cagataaatgtcaaagagcatctgcttttgttatcaatacttcttatgaacttgagagtgatgttatgaattctctctattctatattcccttctctata |
4481378 |
T |
|
| Q |
225 |
taccattgg |
233 |
Q |
| |
|
|||||||| |
|
|
| T |
4481377 |
caccattgg |
4481369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 3172561 - 3172455
Alignment:
| Q |
89 |
ctaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgt |
188 |
Q |
| |
|
|||||||| | ||| |||||||| | ||||||| | ||||| || ||||| ||| || ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3172561 |
ctaatgatttgatgatagaatttatgattgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgt |
3172462 |
T |
|
| Q |
189 |
aatgaat |
195 |
Q |
| |
|
|||||| |
|
|
| T |
3172461 |
tatgaat |
3172455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 245
Target Start/End: Original strand, 4266443 - 4266635
Alignment:
| Q |
54 |
gaaggaccttcttaactttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctatt |
153 |
Q |
| |
|
||||||||||| | | |||| ||||| ||| || |||||||| | ||| || ||||| | | |||| ||| ||||||| |||| |||| || ||||| |
|
|
| T |
4266443 |
gaaggaccttcctgattttacaaggattacagatcctaatgatttgatgataaaatttattaccgaagtggcggatagatgtcaccgagcctcttctatt |
4266542 |
T |
|
| Q |
154 |
gttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggacc-tttgcttct |
245 |
Q |
| |
|
||| |||| |||| ||||||||||| ||||||| |||||||| ||||| |||| |||| |||| |||| |||||||| || ||||||||| |
|
|
| T |
4266543 |
gttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttct |
4266635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 4458386 - 4458258
Alignment:
| Q |
118 |
gaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattccttt |
217 |
Q |
| |
|
|||| ||||||||||| ||| ||||| || |||||||| |||| |||| ||||||||||| ||||||| |||||| | ||||| |||| |||| || |
|
|
| T |
4458386 |
gaagtggcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttccctt |
4458287 |
T |
|
| Q |
218 |
ctgtatataccattggacc-tttgcttct |
245 |
Q |
| |
|
|| |||| |||||||| || ||||||||| |
|
|
| T |
4458286 |
ctatatacaccattggcccatttgcttct |
4458258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 3986 - 4151
Alignment:
| Q |
74 |
taaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatga |
173 |
Q |
| |
|
|||||||||||||| | |||||| ||| |||| | ||| |||||||| ||| ||||||||| |||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3986 |
taaggacaacaaatccaaatgatttcagggtaaattttatcattgaaacggaagatagattccacaaagcctcgactattgttttcaacacttacgatga |
4085 |
T |
|
| Q |
174 |
acttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
||||||| | | |||| ||||||| |||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
4086 |
acttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggaccttt |
4151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 20863139 - 20863305
Alignment:
| Q |
73 |
ataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatg |
172 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||| | |||||||||||||||||| || |||||||||||||| |||| | ||| |
|
|
| T |
20863139 |
ataaggacaacaaatcctaatgattcgttgatagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatg |
20863238 |
T |
|
| Q |
173 |
aacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
| |||||| ||||||| ||||||| |||||||||| |||| |||| |||| |||||||| ||||| |
|
|
| T |
20863239 |
agcttgagagtgatgttatgaatgttctctattctatgttcccttctctatacaccattggcccttt |
20863305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 2996 - 3142
Alignment:
| Q |
55 |
aaggaccttcttaactttataaggacaacaaatactaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattg |
154 |
Q |
| |
|
|||||||||| | |||||||||| |||| | || |||||| | |||||||||||| |||||||||| |||||| |||||||||||| || || |||| |
|
|
| T |
2996 |
aaggaccttcctgactttataagaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattg |
3095 |
T |
|
| Q |
155 |
ttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctc |
201 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
3096 |
tttttaacacttataatgaacttgagagtgatgtactgaatgcgctc |
3142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 24107188 - 24107045
Alignment:
| Q |
99 |
catggtagaatttctcattgaagcggcagatagatttcacagag---catcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaat |
195 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||| |||| |||| ||||||||||| ||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
24107188 |
catggtaaaatttttcattgaagcggcagatggattttgtagagcatcatcagctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaat |
24107089 |
T |
|
| Q |
196 |
gcgctctattctacattcctttctgtatataccattggaccttt |
239 |
Q |
| |
|
|||||||||||| |||| || | ||||||| ||||||||||| |
|
|
| T |
24107088 |
acgctctattctatgttcccttttttatatactattggaccttt |
24107045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 24103778 - 24103662
Alignment:
| Q |
130 |
agatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacattcctttctgtatatacca |
229 |
Q |
| |
|
|||| ||||||||| || |||||||| |||| |||| ||||||||||| ||||||| |||||||| ||||| |||| |||| |||| |||| |||| |
|
|
| T |
24103778 |
agatgtcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacacca |
24103679 |
T |
|
| Q |
230 |
ttggacc-tttgcttct |
245 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
24103678 |
ttggcccatttgcttct |
24103662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 3087225 - 3087093
Alignment:
| Q |
104 |
tagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctcta |
203 |
Q |
| |
|
|||||||| ||||||||| || ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| || |
|
|
| T |
3087225 |
tagaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctata |
3087126 |
T |
|
| Q |
204 |
ttctacattcctttctgtatataccattggacc |
236 |
Q |
| |
|
|||| |||| ||| |||||||||||||||| |
|
|
| T |
3087125 |
ttctgtgttcccttcattatataccattggacc |
3087093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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