View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_216 (Length: 270)
Name: NF1345_low_216
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_216 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 26317391 - 26317550
Alignment:
| Q |
90 |
tttatatatctttgtgatatgttgggaatgaaatgttagattcttaataaagaaagaaatgaaaaacatgaagaggtgagtattatgaaaatattgactt |
189 |
Q |
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| T |
26317391 |
tttatatatctttgtgat--gttgggaaagaaatgttagattcttaataaagaaagaaatgaaaaacatgaagagatgagtattatgaaaatattgactt |
26317488 |
T |
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| Q |
190 |
ttggttcatgtgcatgatggtgtgttaatgttaatatttgcatatatttgcctaagtggcgg |
251 |
Q |
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| T |
26317489 |
ttggttcatgtgcatgatggtgtgttaatgttaatatttgcatatatttttctaagtggcgg |
26317550 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 16074972 - 16075048
Alignment:
| Q |
142 |
aaagaaatgaaaaacatgaagaggtgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat |
218 |
Q |
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| T |
16074972 |
aaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggataatgatgtgttaat |
16075048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 36386635 - 36386590
Alignment:
| Q |
165 |
gtgagtattatgaaaatattgacttttggttcatgtgcatgatggt |
210 |
Q |
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| T |
36386635 |
gtgagttttatgaaaagattgatttttgggtcatgtgcatgatggt |
36386590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 32450220 - 32450168
Alignment:
| Q |
166 |
tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat |
218 |
Q |
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| T |
32450220 |
tgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaat |
32450168 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 21491451 - 21491399
Alignment:
| Q |
166 |
tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat |
218 |
Q |
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| T |
21491451 |
tgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaat |
21491399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 49499305 - 49499357
Alignment:
| Q |
166 |
tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat |
218 |
Q |
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| T |
49499305 |
tgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaat |
49499357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 11937833 - 11937781
Alignment:
| Q |
166 |
tgagtattatgaaaatattgacttttggttcatgtgcatgatggtgtgttaat |
218 |
Q |
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| T |
11937833 |
tgagttttatgaaaatattttattttggttcatgtggatgatgatgtgttaat |
11937781 |
T |
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