View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_22 (Length: 608)

Name: NF1345_low_22
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_22
NF1345_low_22
[»] chr1 (5 HSPs)
chr1 (30-600)||(29213872-29214443)
chr1 (367-418)||(1034504-1034555)
chr1 (56-139)||(29465260-29465343)
chr1 (192-266)||(18301628-18301700)
chr1 (355-470)||(18301430-18301546)
[»] chr2 (4 HSPs)
chr2 (192-468)||(26602355-26602631)
chr2 (351-443)||(17639994-17640085)
chr2 (398-472)||(9586104-9586178)
chr2 (238-296)||(9586287-9586347)
[»] chr3 (7 HSPs)
chr3 (192-470)||(28261909-28262176)
chr3 (192-469)||(9354320-9354601)
chr3 (192-301)||(50089058-50089165)
chr3 (388-470)||(50089235-50089317)
chr3 (192-256)||(23316497-23316560)
chr3 (192-301)||(9378438-9378545)
chr3 (386-470)||(49031284-49031369)
[»] scaffold0891 (1 HSPs)
scaffold0891 (192-470)||(684-969)
[»] scaffold0081 (1 HSPs)
scaffold0081 (192-301)||(10565-10673)
[»] chr6 (1 HSPs)
chr6 (192-297)||(17261381-17261483)
[»] chr8 (3 HSPs)
chr8 (199-470)||(28744525-28744800)
chr8 (199-442)||(28641336-28641583)
chr8 (274-452)||(7636185-7636364)
[»] chr5 (3 HSPs)
chr5 (192-314)||(8542336-8542458)
chr5 (241-328)||(27316491-27316576)
chr5 (397-469)||(27316654-27316726)
[»] scaffold0445 (1 HSPs)
scaffold0445 (192-335)||(3712-3856)
[»] chr7 (4 HSPs)
chr7 (210-301)||(2938962-2939051)
chr7 (231-286)||(7737697-7737751)
chr7 (219-301)||(17493634-17493715)
chr7 (219-301)||(17559499-17559580)
[»] chr4 (2 HSPs)
chr4 (348-448)||(5408140-5408240)
chr4 (356-439)||(8690752-8690835)


Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 30 - 600
Target Start/End: Complemental strand, 29214443 - 29213872
Alignment:
Q  30 ttttaatggtgatcgcgtttgtattgcccaaatgaacaatacacattattgtcactagctcctgctctctcacctttgtataccctaataaagaccctac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29214443 ttttaatggtgatcgcgtttgtattgcccaaatgaacaatacacattattgtcactagctcctgctctctcacctttgtataccctaatcaagaccctac 29214344  T
Q  130 actgattatcataaagggtaggtagtatatccgtttgtcacaagtatggaagcgtttttaggaatcataaaacaaaattaataaaattgaattgaatttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29214343 actgattatcataaagggtaggtagtatatccgtttgtcacaagtatggaagtgtttttaggaatcataaaacaaaattaataaaattgaattgaatttt 29214244  T
Q  230 ccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaagagatgttctttataacctataaacccaacgg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  29214243 ccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaggagagtttctttataacctataaacccaacgg 29214144  T
Q  330 accaactctccccatcatcgtcctgctttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatg 429  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29214143 accaactcgccccatcatcgtcctgctttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatg 29214044  T
Q  430 gtgggttaaacgggccaacctgacaggtccaacctattttgacttccataggttga-ctatatttgtgtagatgtacggggtcaggtttnnnnnnnnnnn 528  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||               
T  29214043 gtgggttaaacgggccaacccgacgggtccaacctattttgacttccataggttgacctatatttgtgtagatgtacagggtcaggttttaaaaaataaa 29213944  T
Q  529 nnnnnnnnnngacttaagtgattattgttcaaacacctacaagtttagcaatattatctgtccatattattc 600  Q
              |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  29213943 ttaattaaaagacttaagtgattattgttcaaacacctacaagtttagcaatattaccagtccataatattc 29213872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 1034504 - 1034555
Alignment:
Q  367 ttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccc 418  Q
    |||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  1034504 ttaggcggagcagacaccctacaactggcaggttcaaaatctcaacccaccc 1034555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 29465260 - 29465343
Alignment:
Q  56 cccaaatgaacaatacacattattgtcactagctcctgctctctcacctttgtataccctaataaagaccctacactgattatc 139  Q
    ||||||||||| |  || || |||||||||||||| |||||||||||| |  ||||||||||| ||||| || ||||| |||||    
T  29465260 cccaaatgaaccaagcagataattgtcactagctcttgctctctcaccctcatataccctaatcaagacgctgcactggttatc 29465343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 18301700 - 18301628
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgat 266  Q
    ||||||||||||||| |  ||||||| |||||| ||||||||| ||||||| ||| ||||||||| |||||||||    
T  18301700 aatcataaaacaaaagtcgtaaaatt-aattgatttttccccc-aatatattgagatgaaaattgcaaaattgat 18301628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 470
Target Start/End: Complemental strand, 18301546 - 18301430
Alignment:
Q  355 ctttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtggg-ttaaacgggccaacctgac 453  Q
    |||||||||  |||||||||||| | || | ||| |||||  |||| |||| |||||||||||  ||||||||||| ||| |||||| | |||||| ||     
T  18301546 ctttttagcgggttaggcggagcgggcatcctacatgtggtgggttgaaaaactcaacccaccacgctaaaaatggcgggtttaaacagaccaacccgat 18301447  T
Q  454 aggtccaacctattttg 470  Q
     | ||||||||||||||    
T  18301446 ggatccaacctattttg 18301430  T

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Target: chr2 (Bit Score: 101; Significance: 9e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 192 - 468
Target Start/End: Complemental strand, 26602631 - 26602355
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagt 291  Q
    ||||||||||||| | | |||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |    
T  26602631 aatcataaaacaagagtgataaaatt-aattgaatttttcccc-aatatatggagatgaaaattggaaaattgattgtgac-ttataaataaaaagaact 26602535  T
Q  292 gaaaaagaga-tgttctttataacctataaacccaacggacca--actctccccatcatcgtcctgctttttagcaagttaggcggagcagacaccttac 388  Q
    |||||||||| | || |||||||||||| |||||||||| |||   | | |||||||| |  ||  |||||||||  ||||||| |||| | |||| |||    
T  26602534 gaaaaagagagttttttttataacctatcaacccaacgggccaggccccgccccatcaccaccccactttttagcgggttaggctgagcgggcaccctac 26602435  T
Q  389 ttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattt 468  Q
    ||||||| |||||||| |||||||||||||  |||||||||| |||||||||||||||| | ||| ||||||||| ||||    
T  26602434 ttgtggcgggttcaaattctcaacccaccccactaaaaatggcgggttaaacgggccaatccgacgggtccaacccattt 26602355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 443
Target Start/End: Complemental strand, 17640085 - 17639994
Alignment:
Q  351 cctgctttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacggg 443  Q
    |||||||||||||  |||||||||||| | |||||  |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  17640085 cctgctttttagcgggttaggcggagcgggcacctg-cttgtgacgggttcaaaatctcaactcaccctgctaaaaatggtgggttaaacggg 17639994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 9586178 - 9586104
Alignment:
Q  398 gttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttgac 472  Q
    |||||||||||||||||||||  ||||| |||| ||||||||| | |||||| ||||||||||||| ||||||||    
T  9586178 gttcaaaatctcaacccaccccactaaatatggcgggttaaactgaccaacccgacaggtccaacccattttgac 9586104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 9586347 - 9586287
Alignment:
Q  238 tatatggaggtgaaaattggaaaattgatcgtgac--tttataaataaaaagaagtgaaaa 296  Q
    |||| ||||| |||||||||||||||||| |||||   |||||||||||||||||| ||||    
T  9586347 tatacggaggagaaaattggaaaattgattgtgacgacttataaataaaaagaagtaaaaa 9586287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 192 - 470
Target Start/End: Original strand, 28261909 - 28262176
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaatttt-ccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaa-aagaa 289  Q
    ||||||||||||||| | |||||||| |||||| |||| ||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||| || ||    
T  28261909 aatcataaaacaaaagtgataaaatt-aattgattttttccccccaatatatggacttgaaaattggaaaattgattgtgac-ttataaataaataaaaa 28262006  T
Q  290 gtgaaaaagagatgttctttataacctataaacccaacggaccaactctccccatcatcgtcctgctttttagcaagttaggcggagcagacaccttact 389  Q
    |||||||| |||  |||||| |||| ||| |||| ||||| ||||| | ||||           ||||||||||  |||||||||||| |||||| ||||    
T  28262007 gtgaaaaaaagagtttctttttaacatatcaaccgaacgggccaacccgcccc-----------gctttttagcgggttaggcggagcggacaccctact 28262095  T
Q  390 tgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttg 470  Q
    |||| | ||||||||| |||||||| ||| |  |||||||  |||||||||||| ||||||||| ||||||||| ||||||    
T  28262096 tgtgacgggttcaaaacctcaacccgccccgtcaaaaatgacgggttaaacgggtcaacctgacgggtccaacccattttg 28262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 469
Target Start/End: Complemental strand, 9354601 - 9354320
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactt-tataaataaaaagaag 290  Q
    |||||| |||||||| | |||||||| ||||||||||   ||| |||||| ||||| |||||||||||||||||   |||||| |||||||||| |||||    
T  9354601 aatcatgaaacaaaagtgataaaatt-aattgaatttgttccctaatatacggaggagaaaattggaaaattgaaattgacttatataaataaagagaag 9354503  T
Q  291 tgaaaaagagatgttctttataacctataaacccaacggaccaactc-tc----cccatcatcgtcctgctttttagcaagttaggcggagcagacacct 385  Q
    |||||||||||   | ||| |||||||| || ||||||| ||||| | ||    ||||||||  | | ||||||||| | ||||||| |||  ||||||     
T  9354502 tgaaaaagagaatatatttttaacctatcaatccaacgggccaacccgtcccatcccatcatatttccgctttttagtaggttaggcagagtggacacca 9354403  T
Q  386 tacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctatttt 469  Q
    |||| ||||||||||||||||  ||  ||| ||||||||||   ||||| || || | |||||| ||||||||||||| |||||    
T  9354402 tactagtggcaggttcaaaattccattcca-cctgctaaaagatgtgggctataccgaccaacccgacaggtccaacccatttt 9354320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 50089058 - 50089165
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagt 291  Q
    |||||| |||||||| | |||||||| |||  ||||||  ||||| |||||| ||  |||||||||||||||||| |||||||  |||||||||||||||    
T  50089058 aatcatgaaacaaaaattataaaatt-aatataattttttccccagtatatgtagaagaaaattggaaaattgattgtgacttg-taaataaaaagaagt 50089155  T
Q  292 gaaaaagaga 301  Q
    ||||||||||    
T  50089156 gaaaaagaga 50089165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 50089235 - 50089317
Alignment:
Q  388 cttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttg 470  Q
    ||||||||||||||| ||||||||| ||||  |||||||| |  |||||||||||||||| | ||| ||||||||| ||||||    
T  50089235 cttgtggcaggttcagaatctcaactcaccacgctaaaaaagacgggttaaacgggccaaaccgacgggtccaacccattttg 50089317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 23316560 - 23316497
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattg 256  Q
    ||||||||||||||| | |||||||| ||||||||||| |||| |||||||||| ||||||||||    
T  23316560 aatcataaaacaaaagtgataaaatt-aattgaatttttccccaaatatatggaagtgaaaattg 23316497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 9378545 - 9378438
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagt 291  Q
    |||||| |||||||| | |||||||| ||||||||||   ||| || ||| ||||| |||||||| ||||||||   |||||| ||||||||| ||||||    
T  9378545 aatcatgaaacaaaagtgataaaatt-aattgaatttgttccctaacatacggaggagaaaattgaaaaattgaaattgactt-ataaataaagagaagt 9378448  T
Q  292 gaaaaagaga 301  Q
    ||||| ||||    
T  9378447 gaaaaggaga 9378438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 470
Target Start/End: Original strand, 49031284 - 49031369
Alignment:
Q  386 tacttgtggcaggttcaaaa-tctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttg 470  Q
    |||||||||| ||||||||| |||||| ||| || | ||| ||||  |||||||||||| ||||| |||| |||||||| ||||||    
T  49031284 tacttgtggcgggttcaaaaatctcaatccatcccgttaagaatgacgggttaaacgggtcaacccgacatgtccaacccattttg 49031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 192 - 470
Target Start/End: Complemental strand, 969 - 684
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaa-aagaag 290  Q
    ||||||||||||||| | |||||||| |||||||||||  ||| |||||||| |||||||||||| ||||||||| || |||| ||||||||| || |||    
T  969 aatcataaaacaaaagttataaaatt-aattgaattttttccc-aatatatgaaggtgaaaattgaaaaattgattgtaactt-ataaataaataaaaag 873  T
Q  291 tgaaaaagagatgttctttataacctataaacccaacggaccaactctccc---------catcatcgtcctgctttttagcaagttaggcggagcagac 381  Q
    |||||||||||  |||||| |||| ||| ||||||||||  |||| | |||         |||||    || ||||||||||  ||||||| |||  |||    
T  872 tgaaaaagagagtttctttttaacatatcaacccaacgggtcaacccacccgccccgccccatcactaccccgctttttagcgggttaggcagagtggac 773  T
Q  382 accttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttg 470  Q
    ||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| || ||| ||||| ||||||    
T  772 accctacttgtagcaggttcaaaatctcaacccaccccgctaaaaatggttggttaaacaggccaacctaactggttcaacccattttg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 10565 - 10673
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccc-caatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaag 290  Q
    ||||||||||||||| | |||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||| | ||||| |||||||||||||||    
T  10565 aatcataaaacaaaagtgataaaatt-aattgaattttcccccacaatatatggacgtgaaaattgaaaaattgattgcgactt-ataaataaaaagaag 10662  T
Q  291 tgaaaaagaga 301  Q
    |||||||||||    
T  10663 tgaaaaagaga 10673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 17261381 - 17261483
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagt 291  Q
    ||||||||||||||| | |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||    
T  17261381 aatcataaaacaaaagtgataaaatt-aattgaattttcaccccaatatatggatgtgaaaattggaaaattgat-ttgac-ttataaataaaaagaagt 17261477  T
Q  292 gaaaaa 297  Q
    ||||||    
T  17261478 gaaaaa 17261483  T

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Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 470
Target Start/End: Complemental strand, 28744800 - 28744525
Alignment:
Q  199 aaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaag 298  Q
    |||||||| | |||||||| ||||| |||||   |||| ||| || ||||||||||||  |||||||| ||||||| ||||||||||||||||||||||     
T  28744800 aaacaaaagtgataaaatt-aattgtatttttttcccattatgtgaaggtgaaaattgataaattgattgtgactt-ataaataaaaagaagtgaaaaat 28744703  T
Q  299 agatgttctttataacctataaacccaacggaccaactctccc------catcatcgtcctgctttttagcaagttaggcggagcagacaccttacttgt 392  Q
    | |  |||||| |||  ||| |||||||||| ||||  | |||      | ||| || || | ||||||||| |||||||||||| | |||| ||||| |    
T  28744702 atagtttctttttaatatatcaacccaacggtccaatccgccctgccgccgtcaccgccccgttttttagcaggttaggcggagcgggcaccctacttat 28744603  T
Q  393 ggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctattttg 470  Q
    |||| ||||||||||||||||||||| ||||||||| | ||||||||| || ||| | ||| ||||||| | ||||||    
T  28744602 ggcaagttcaaaatctcaacccaccccgctaaaaatagcgggttaaaccggtcaatccgacgggtccaatccattttg 28744525  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 442
Target Start/End: Complemental strand, 28641583 - 28641336
Alignment:
Q  199 aaacaaaattaataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaag 298  Q
    |||||||| | |||||||| ||||| |||||   |||| ||| || |||||||||||| | ||||||| ||||||| |||||||||||||||||||||||    
T  28641583 aaacaaaagtgataaaatt-aattgtatttttttcccattatgtgaaggtgaaaattgaataattgattgtgactt-ataaataaaaagaagtgaaaaag 28641486  T
Q  299 agatgttctttataacctataaacccaacggaccaactct-------ccccatcatcgtcctgctttttagcaagttaggcggagcagacaccttacttg 391  Q
      |  |||||| |||  ||| |||||||||| ||||| ||       |||| ||| |  || | ||||||||  |||||||||||||| |||| |||||     
T  28641485 gtagtttctttttaatatatcaacccaacggtccaac-ctaccccgcccccgtcaccaccccgttttttagcgggttaggcggagcaggcaccctactta 28641387  T
Q  392 tggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgg 442  Q
    ||||| ||||||||||||||||||||  ||| ||||| | |||||||||||    
T  28641386 tggcaagttcaaaatctcaacccacctcgctcaaaatagcgggttaaacgg 28641336  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 452
Target Start/End: Complemental strand, 7636364 - 7636185
Alignment:
Q  274 ttataaataaaaagaagtgaaaaagagat--gttctttataacctataaacccaacggaccaactctccccatcatcgtcctgctttttagcaagttagg 371  Q
    ||||| |||||||||||||||||||| ||   |||||| |||  ||| |||||||| ||||||||| ||||||   || || || |||| ||||| ||||    
T  7636364 ttatatataaaaagaagtgaaaaagatatagtttctttttaatatatcaacccaacagaccaactcgccccatttccggcccgc-ttttggcaaggtagg 7636266  T
Q  372 cggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctga 452  Q
    |  ||| |||||| |||||||| | | ||||||||||||||||||| |||  |||| || |||||||||||| ||||||||    
T  7636265 cctagcggacaccctacttgtgacggattcaaaatctcaacccaccttgcacaaaaaggcgggttaaacgggtcaacctga 7636185  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 8542458 - 8542336
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttccccccaa-tatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaag 290  Q
    ||||||||||||||| | ||| |||| |||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||   |||||||||||||    
T  8542458 aatcataaaacaaaagtgatacaatt-aattgaattttcccccccgctatatggaggtgaaaattgaaaaattgattgtgacttataaaataaaaagaag 8542360  T
Q  291 tgaaaaagagatgttctttataac 314  Q
    |||||||||||  |||||| ||||    
T  8542359 tgaaaaagagagtttctttttaac 8542336  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 27316491 - 27316576
Alignment:
Q  241 atggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaagagatgttctttataacctataaacccaacg 328  Q
    ||||||||||||||||||||||  || ||||| |||||||| ||||||||||||||||| |  |||||| |||| ||| |||||||||    
T  27316491 atggaggtgaaaattggaaaatatattgtgac-ttataaat-aaaagaagtgaaaaagatagtttctttttaacatatcaacccaacg 27316576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 27316654 - 27316726
Alignment:
Q  397 ggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaacctgacaggtccaacctatttt 469  Q
    ||||||||||| ||||||| || ||||||||||  ||| |||| ||||||||| ||| ||| ||||| |||||    
T  27316654 ggttcaaaatcccaacccatcccgctaaaaatgacggggtaaatgggccaacccgacgggttcaacccatttt 27316726  T

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Target: scaffold0445 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 3856 - 3712
Alignment:
Q  192 aatcataaaacaaaattaataaaattgaattgaattttc---cccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaaga 288  Q
    |||||||||||||||   |||||||| |||||||||||    ||| | ||||||||||||||||||| |||||||||| ||||| || ||||||||||||    
T  3856 aatcataaaacaaaagatataaaatt-aattgaattttttctcccactatatatggaggtgaaaatttgaaaattgattgtgac-ttgtaaataaaaaga 3759  T
Q  289 agtgaaaaagagatgttctttataacctataaacccaacggaccaac 335  Q
    ||| ||||||| |  |||||| | || ||| |||||||||| |||||    
T  3758 agtaaaaaagatagtttctttttgacatattaacccaacgggccaac 3712  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 2939051 - 2938962
Alignment:
Q  210 ataaaattgaattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaagaga 301  Q
    |||||||| |||||||||||||||||||||||   ||| |||||||||| ||| ||| ||||| |||||||||||||||||| |||||||||    
T  2939051 ataaaatt-aattgaattttccccccaatatacaaaggagaaaattggataatcgattgtgac-ttataaataaaaagaagtaaaaaagaga 2938962  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 7737697 - 7737751
Alignment:
Q  231 cccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaa 286  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||    
T  7737697 cccccaatatacggaggtgaaaattggaaagttgattgtgac-ttataaataaaaa 7737751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 17493634 - 17493715
Alignment:
Q  219 aattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaagaga 301  Q
    ||||||| |||  |||||||||| | | | |||||||||| ||||||| |||| || |||||||||||||| |||||||||||    
T  17493634 aattgaaatttttccccaatatacgaaagagaaaattggacaattgattgtgaatt-ataaataaaaagaaatgaaaaagaga 17493715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 17559580 - 17559499
Alignment:
Q  219 aattgaattttccccccaatatatggaggtgaaaattggaaaattgatcgtgactttataaataaaaagaagtgaaaaagaga 301  Q
    ||||||| |||  |||||||||| | | | |||||||||| ||||||| |||| || |||||||||||||| |||||||||||    
T  17559580 aattgaaatttttccccaatatacgaaagagaaaattggacaattgattgtgaatt-ataaataaaaagaaatgaaaaagaga 17559499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 5408240 - 5408140
Alignment:
Q  348 cgtcctgctttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaacgggccaa 447  Q
    ||||| |||||||| |  |||||||||||| |||||  ||||  ||||||| ||||||||||||||||| || |||||||||  |||||||| ||| |||    
T  5408240 cgtcccgctttttaacgggttaggcggagcggacactctactaatggcaggctcaaaatctcaacccactctactaaaaatgacgggttaaatgggtcaa 5408141  T
Q  448 c 448  Q
    |    
T  5408140 c 5408140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 8690752 - 8690835
Alignment:
Q  356 tttttagcaagttaggcggagcagacaccttacttgtggcaggttcaaaatctcaacccaccctgctaaaaatggtgggttaaa 439  Q
    ||||||||  |||||||||||| |||| | ||||  |||| |||| |||||||||| |||| ||||||||||||| ||||||||    
T  8690752 tttttagcgggttaggcggagcggacatcctactaatggcgggtttaaaatctcaaaccactctgctaaaaatggcgggttaaa 8690835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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