View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_222 (Length: 264)
Name: NF1345_low_222
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_222 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 28184629 - 28184395
Alignment:
| Q |
30 |
attaactcggtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctattggagtttcaatggaca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28184629 |
attaactcggtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctatcggagtttcaatggaca |
28184530 |
T |
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| Q |
130 |
acactcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatcttac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184529 |
acactcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatcttac |
28184430 |
T |
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| Q |
230 |
tgcaagtagaaacccaagtttggattatggtttca |
264 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28184429 |
tgcaagtagaaacccaagtttggattatggtttca |
28184395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 42609985 - 42609789
Alignment:
| Q |
60 |
gatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctattggagtttcaatggacaacactcgtttagctcttgcttcgatcggta |
159 |
Q |
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| T |
42609985 |
gatgtttcaagggataaggcacttcatggaggaaatttccaaggtacaccgattggtgtatcgatggataacactcgtttagccattgctgccattggta |
42609886 |
T |
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| Q |
160 |
aactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatcttactgcaagtagaaacccaagtttggatta |
256 |
Q |
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| T |
42609885 |
aacttatgtttgctcaattcactgagcttgtgaatgacatctataacaacggattgccttcaagtctcactgctagccgcaatccaagtttggatta |
42609789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 264
Target Start/End: Original strand, 40944793 - 40945024
Alignment:
| Q |
33 |
aactcggtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctattggagtttcaatggacaaca |
132 |
Q |
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||||| |||||||||||||| ||||| ||||||||||| ||||| || | |||||||| |||||||||||||| ||||||||||| || ||||| || | |
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| T |
40944793 |
aactctgtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaactttcaaggaacgcctattggagtatccatggataata |
40944892 |
T |
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| Q |
133 |
ctcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatcttactgc |
232 |
Q |
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| T |
40944893 |
cacgtttggctctcgcatcaattggcaaacttatgtttgctcaattctctgagcttgtcaatgatttttacaacaatggattgccttcaaatctttctgc |
40944992 |
T |
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| Q |
233 |
aagtagaaacccaagtttggattatggtttca |
264 |
Q |
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| T |
40944993 |
gagtagaaatcctagtttggattatggtttca |
40945024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 264
Target Start/End: Original strand, 40958758 - 40958989
Alignment:
| Q |
33 |
aactcggtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctattggagtttcaatggacaaca |
132 |
Q |
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||||| |||||||||||||| ||||| ||||||||||| ||||| || | |||||||| || ||||||||||| ||||||||||| || ||||| || | |
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| T |
40958758 |
aactctgtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaaatttcaaggaacgcctattggagtatccatggataata |
40958857 |
T |
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| Q |
133 |
ctcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatcttactgc |
232 |
Q |
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| T |
40958858 |
cacgtttggctctcgcatcaattggcaaacttatgtttgctcaattctctgagcttgtcaatgatttttacaacaatggattgccttcaaatctttctgc |
40958957 |
T |
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| Q |
233 |
aagtagaaacccaagtttggattatggtttca |
264 |
Q |
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| T |
40958958 |
aagtagaaatcctagtttggattatggtttca |
40958989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 43216592 - 43216769
Alignment:
| Q |
85 |
atggtggtaactttcaaggaacacctattggagtttcaatggacaacactcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctga |
184 |
Q |
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|||||||||| || ||||| || || ||||||||||||||||| || ||||||||| || |||| || || |||||| | ||||| ||||| |||| |
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| T |
43216592 |
atggtggtaatttccaaggcaccccaattggagtttcaatggataatgtacgtttagctgttacttcaattggaaaactcgtctttgcgcaatttactga |
43216691 |
T |
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| Q |
185 |
gcttgttaatgatttttacaacaatggtttgccttcgaatcttactgcaagtagaaacccaagtttggattatggttt |
262 |
Q |
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| | || ||||| || || |||||||| |||| || |||||| |||| |||||||||||||| ||||||||||||| |
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| T |
43216692 |
gttagtcaatgacttgtataacaatgggctgccgtcaaatctttctgctggtagaaacccaagtctggattatggttt |
43216769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 40549528 - 40549703
Alignment:
| Q |
51 |
cctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctattggagtttcaatggacaacactcgtttagctcttgctt |
150 |
Q |
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|||||||| ||||| ||||||||| || | |||||||| ||||||||||| ||||| ||||| ||||| ||||| || || | |||||| | ||| |
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| T |
40549528 |
cctttgattgatgtgaaaaggaacaaagctttgcatggtggaaactttcaaggtacaccaattggtgtttctatggataatacaagattagctttggctg |
40549627 |
T |
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| Q |
151 |
cgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttttacaacaatggtttgccttcgaatct |
226 |
Q |
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| T |
40549628 |
ctattggaaagttactttttgctcaaatgtctgagttggttaatgatttttacaacaatggtttgccttcaaatct |
40549703 |
T |
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